@TOME V3
(Apr 2019)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : A4ZPY7_CHRVL: (2019-01-25 )
MSARIAERAMAALGRSGMGARATRVGGGRASEVFLVQGGDSELIAYWLPEGGAREARRRFALLERMAGQFRLAPRPLAVDEDGDAALLLVEKLEGVAPAACGPLAPDTVRRLAENFIGTLASLHALEVAPADRPPDYLRRILSEWRRRWNAEEAGGAIDADFSAVADWLTERMPETAPAAWLHNDYKLDNILVDPGDPARVVGVVDWELAAVGHPLADLGAALAYWIESRDSSLLRLDAPGPSCAPGAPTREALVDLYAAAAGREVTEPAYWYAYGLLRLAVITQQLALRRRDEGQRVPRAKLIVRWLLDRAAEACGGGRL

Atome Classification :

(22 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ADP_A_6(2OLC)
MTNK_BACSU
[Raw transfer]




ATP_A_8(3ATT)
Y3168_MYCTU
[Raw transfer]




ADN_A_5(2Q83)
COTI_BACSU
[Raw transfer]




EDO_A_16(3CSV)
?
[Raw transfer]




23 Fugue 81.1620% -10 - C2 -3ATS - Y3168_MYCTU -
38 HHSearch 80.3622% -37 - C2 -3DXP - ? -
39 HHSearch 77.9820% -11 - C2 -3ATS - Y3168_MYCTU -
40 HHSearch 76.5620% -11 - C2 -3ATT 3.4 Y3168_MYCTU
37 Fugue 72.1815% -17 - C2 -4OCV - ? -
35 Fugue 71.9517% 1 - C2 -1NW1 - CKA2_CAEEL -
30 Fugue 70.0417% -21 * C2 *2PPQ - KHSE_AGRFC -
1 PsiBlast_PDB 68.1626% -58 - C2 -3DXP - ? -
60 SP3 68.1214% 4 - C2 -1NW1 - CKA2_CAEEL -
29 Fugue 63.7814% -24 - C2 -3HAM - ? -
28 Fugue 60.6716% 1 - C2 -1J7L - KKA3_ENTFL -
42 HHSearch 59.5816% -9 - C2 -2PPQ - KHSE_AGRFC -
54 HHSearch 58.6016% -3 - C2 -1NW1 - CKA2_CAEEL -
53 HHSearch 58.5716% -2 - C2 -1NW1 - CKA2_CAEEL -
3 PsiBlast_PDB 57.7724% 6 - C2 -3ATS - Y3168_MYCTU -
4 PsiBlast_PDB 57.6924% 0 - C2 -3ATT - Y3168_MYCTU -
41 HHSearch 57.0418% 10 - C2 -6EF6 - ? -
25 Fugue 56.0815% 11 - C2 -2OLC 5.2 MTNK_BACSU
57 HHSearch 54.6012% -3 - C2 -4OCV - ? -
47 HHSearch 54.1818% -8 - C2 -5IGI - ? -
45 HHSearch 51.9117% -22 - C2 -3CSV 2.8 ?
52 HHSearch 50.5617% -2 - C2 -2Q83 3.2 COTI_BACSU