@TOME V3
(Apr 2019)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : A6FXA8_9DELT: (2019-01-26 )
MHSRPQISPERAAQLAAEWFEGQLDAPAELDSYADRNFLVRAPDGTKAVLKVPNVELAEDIDLQIAILKWLEARPSAPLVPRVLGPTRTIEDDAGRPTRAWMVGWIEGELWFDASPTPALREELGAALGQLARDLEDFRHPGMERHFAWNLAEANWIAEELHRFEDPARAELVCDALMQFQGRVLPRLAELPTQVIHGDANDKNLAVAEGRLVGVFDFGDACWCPAVCDLAIALAYAAMDLRLGCALPEVAAACAQVCAGYHGRRPLTALELDLLYDLLRARLAVSVTSSTRAREAEPDNAYVSASEQGAWSVLEALGAVGRRAFTATVAEACGLALAPRVPGARTGDELLAARRRRLGPSLSLSYASSGMPLYIRRGEGSWLFDEHDQAFLDCVNNVCHVGHCHPRVVEAGAAQMARLNTNTRYLHEGLVDYAEALCATLPAPLEVVYLVNSGSEANELALRLARDYTGGFDVAVLDAAYHGNTGNLVDMSPYKFDAPGGRGRREWVHVLPTPDPYRGAHGDDGPAYAAALDAADAAARGRGSRLAALFCESVLGCAGQVVPASGFLAAAYARARAAGAVCIADEVQVGFGRVGDGMWAFEAEGVVPDILTLGKPIGNGHPLGAVVTTRAIAEALGGGRMEFFCTFGGNPVSAAVGAAVLAVIEDEGLVANARDTGSWLRGAFEQLAADPVLGRGIGEVRGRGLFIGVELVEDRSTKRPDAARASAIVAHARARGVLLSTDGPARNVIKIKPPICFADVEARILASTLARALSATMR

Atome Classification :

(60 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

EXT_B_6(5G4J)
?
[Raw transfer]




EXT_A_3(5G4J)
?
[Raw transfer]




EXT_A_3(5G4J)
?
[Raw transfer]




LCS_A_4(1D7U)
DGDA_BURCE
[Raw transfer]




LCS_A_4(1D7U)
DGDA_BURCE
[Raw transfer]




DCS_A_4(1D7S)
DGDA_BURCE
[Raw transfer]




MPM_A_4(1M0O)
DGDA_BURCE
[Raw transfer]




EPC_A_4(1M0Q)
DGDA_BURCE
[Raw transfer]




ELP_A_4(1M0P)
DGDA_BURCE
[Raw transfer]




PMP_A_3(5GHF)
?
[Raw transfer]




HCP_A_4(1M0N)
DGDA_BURCE
[Raw transfer]




PMP_B_6(2ZSM)
GSA_AERPE
[Raw transfer]




NMA_A_4(1D7V)
DGDA_BURCE
[Raw transfer]




PMP_A_4(1ZC9)
DGDA_BURCE
[Raw transfer]




PMP_A_2(2ZSL)
GSA_AERPE
[Raw transfer]




PMP_C_8(2ZSM)
GSA_AERPE
[Raw transfer]




PLP_A_3(4JF1)
ARGD_SALTY
[Raw transfer]




PMP_A_2(2EPJ)
GSA_AERPE
[Raw transfer]




7F7_A_2(5M4D)
?
[Raw transfer]




PLP_A_3(5G4I)
?
[Raw transfer]




PMP_A_4(2ZSM)
GSA_AERPE
[Raw transfer]




PLP_B_8(5G4I)
?
[Raw transfer]




PLP_A_3(5G4I)
?
[Raw transfer]




PLP_A_4(4PPM)
PIGE_SERSF
[Raw transfer]




PMP_A_4(2E7U)
GSA_THET8
[Raw transfer]




7F7_A_2(5M4B)
?
[Raw transfer]




PLP_A_14(4UHO)
?
[Raw transfer]




PLP_B_4(5KR6)
?
[Raw transfer]




PLP_A_4(1Z3Z)
DGDA_BURCE
[Raw transfer]




PLP_A_5(1ZOD)
DGDA_BURCE
[Raw transfer]




PLP_B_4(3DXV)
ACLR_ACHOB
[Raw transfer]




PLP_B_6(4PPM)
PIGE_SERSF
[Raw transfer]




PLP_A_4(1DGE)
DGDA_BURCE
[Raw transfer]




PLP_A_4(1DKA)
DGDA_BURCE
[Raw transfer]




PLP_A_4(2DKB)
DGDA_BURCE
[Raw transfer]




PLP_A_4(1DGD)
DGDA_BURCE
[Raw transfer]




PMP_A_2(3BS8)
GSA_BACSU
[Raw transfer]




PMP_A_3(2GSA)
GSA_SYNP6
[Raw transfer]




5PA_A_4(1D7R)
DGDA_BURCE
[Raw transfer]




PLP_A_4(1ZOB)
DGDA_BURCE
[Raw transfer]




PLP_A_2(5M46)
?
[Raw transfer]




PLP_A_2(5M49)
?
[Raw transfer]




PLP_A_3(4AO9)
BFAT_VARPD
[Raw transfer]




PLP_B_6(2ZUK)
ACLR_ACHOB
[Raw transfer]




PLP_B_5(3DXW)
ACLR_ACHOB
[Raw transfer]




PLP_A_3(4WYD)
BIOA_MYCTU
[Raw transfer]




PLR_A_3(2CFB)
GSA_THEEB
[Raw transfer]




PLP_A_3(1VEF)
LYSJ_THET8
[Raw transfer]




PPE_C_3(1WKH)
LYSJ_THET8
[Raw transfer]




PLP_B_4(1VEF)
LYSJ_THET8
[Raw transfer]




POI_D_4(1WKG)
LYSJ_THET8
[Raw transfer]




PPE_D_4(1WKH)
LYSJ_THET8
[Raw transfer]




POI_C_3(1WKG)
LYSJ_THET8
[Raw transfer]




PLP_A_4(2DKB)
?
[Raw transfer]




160 HHSearch 84.8040% -36 - C4 -5G4J 5.9 ?
159 HHSearch 84.2540% -36 - C4 -5G4I 3.7 ?
22 Blastp_CBE 81.9041% -17 - C4 -5G4I 3.6 ?
21 Blastp_CBE 81.8141% -16 - C4 -5G4J 4.9 ?
2 PsiBlast_PDB 81.1240% -15 - C4 -5G4J 5.8 ?
1 PsiBlast_PDB 80.6040% -16 - C4 -5G4I 3.7 ?
139 Fugue 79.1520% -31 - C2 -4A0G - BIODA_ARATH -
8 PsiBlast_PDB 75.8133% -17 - C4 -1ZC9 4.2 DGDA_BURCE
90 Blastp_CBE 75.6833% -24 - C4 -5LH9 - ? -
88 Blastp_CBE 75.4933% -26 - C4 -5LH9 - ? -
130 Fugue 75.3232% -12 - C4 -1D7U 3.7 DGDA_BURCE
89 Blastp_CBE 75.1833% -24 - C4 -5LH9 - ? -
83 Blastp_CBE 75.1133% -25 - C4 -5LHA - ? -
87 Blastp_CBE 75.0133% -23 - C4 -5LH9 - ? -
7 PsiBlast_PDB 74.8833% -14 - C4 -1M0Q 4.4 DGDA_BURCE
17 PsiBlast_PDB 74.8233% -12 - C4 -1DGD 4.0 DGDA_BURCE
3 PsiBlast_PDB 74.8133% -14 - C4 -1Z3Z 4.3 DGDA_BURCE
11 PsiBlast_PDB 74.7833% -12 - C4 -1DKA 2.9 DGDA_BURCE
12 PsiBlast_PDB 74.7633% -13 - C4 -2DKB 4.4 DGDA_BURCE
13 PsiBlast_PDB 74.7333% -14 - C4 -1D7R 3.1 DGDA_BURCE
15 PsiBlast_PDB 74.6633% -13 - C4 -1D7U 3.7 DGDA_BURCE
10 PsiBlast_PDB 74.5233% -14 - C4 -1ZOD 3.1 DGDA_BURCE
4 PsiBlast_PDB 74.4933% -15 - C4 -1M0N 5.0 DGDA_BURCE
14 PsiBlast_PDB 74.3433% -13 - C4 -1D7S 3.0 DGDA_BURCE
5 PsiBlast_PDB 74.3433% -14 - C4 -1M0O 4.4 DGDA_BURCE
18 PsiBlast_PDB 74.0733% -12 - C4 -1DGE 4.2 DGDA_BURCE
9 PsiBlast_PDB 73.9533% -15 - C4 -1ZOB 3.2 DGDA_BURCE
16 PsiBlast_PDB 73.6933% -14 - C4 -1D7V 2.7 DGDA_BURCE
6 PsiBlast_PDB 73.3033% -10 - C4 -1M0P 3.2 DGDA_BURCE
147 SP3 70.0417% -14 - C4 -2DKB Error ?
51 Blastp_CBE 68.7134% -13 - C4 -5M4B 3.1 ?
79 Blastp_CBE 68.2731% -8 - C4 -5GHF 4.3 ?
52 Blastp_CBE 68.1634% -14 - C4 -5M46 2.9 ?
80 Blastp_CBE 67.9533% -5 * C4 *3DXV 3.3 ACLR_ACHOB
164 HHSearch 67.6225% -60 - C4 -4WYD 3.4 BIOA_MYCTU
54 Blastp_CBE 67.4134% -11 - C4 -5M4D 3.6 ?
53 Blastp_CBE 66.5234% -11 - C4 -5M49 3.5 ?
81 Blastp_CBE 66.5033% -3 - C4 -3DXW 3.0 ACLR_ACHOB
82 Blastp_CBE 66.4633% -4 - C4 -2ZUK 2.7 ACLR_ACHOB
166 HHSearch 65.6528% 1 - C4 -4PPM 3.0 PIGE_SERSF
156 HHSearch 65.6226% -13 - C4 -5KR6 3.8 ?
165 HHSearch 63.4128% 3 - C4 -4PPM 4.3 PIGE_SERSF
163 HHSearch 63.0624% -17 - C4 -4UHO 4.0 ?
48 Blastp_CBE 62.5335% -5 - C4 -1WKG 3.8 LYSJ_THET8
176 HHSearch 62.3327% -23 - C4 -4JF1 4.2 ARGD_SALTY
134 Fugue 62.2223% -4 - C4 -2GSA 4.6 GSA_SYNP6
46 Blastp_CBE 61.9435% -6 - C4 -1WKH 4.6 LYSJ_THET8
45 Blastp_CBE 61.5735% -5 - C4 -1WKH 4.2 LYSJ_THET8
49 Blastp_CBE 61.4635% -5 - C4 -1VEF 2.9 LYSJ_THET8
50 Blastp_CBE 61.2535% -4 - C4 -1VEF 2.6 LYSJ_THET8
47 Blastp_CBE 61.0435% -4 - C4 -1WKG 4.3 LYSJ_THET8
174 HHSearch 58.2923% -30 - C4 -4AO9 2.4 BFAT_VARPD
98 Blastp_CBE 52.6232% -11 - C4 -2ZSL 4.2 GSA_AERPE
99 Blastp_CBE 52.5932% -11 - C4 -2EPJ 4.3 GSA_AERPE
100 Blastp_CBE 52.5132% -15 - C4 -2E7U 3.7 GSA_THET8
95 Blastp_CBE 51.9932% -12 - C4 -2ZSM 3.7 GSA_AERPE
96 Blastp_CBE 51.9532% -10 - C4 -2ZSM 3.8 GSA_AERPE
97 Blastp_CBE 51.7432% -11 - C4 -2ZSM 4.0 GSA_AERPE
104 Blastp_CBE 49.5231% -38 - C4 -2CFB 2.5 GSA_THEEB
103 Blastp_CBE 42.6831% -2 - C4 -3BS8 3.3 GSA_BACSU