@TOME V3
(Apr 2019)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B4V000_9ACTN: (2019-01-26 )
MTQAALAPGGFDEFEMHQVLKRGCAAVGLDSSEARLLRGHTNAVIHLVKEHVVVKIARKGSRIDDVARTVRFVRWLMDAGFPTVSLHPVDQPVGVGQHALTFWEYLPQPSDPVPAAQLAKPLYSLHTLPASPEALPAHDNLAAIRRSLKSITCLSDEALAFLNGSTEQLESALHVVQFELPEGVIQGDPQHRNALHTASGGAVLCDWDTVAIGQPEWDLVTVEVHCRRFGHGSQHYEAFANTYGWDVTRWSGYQTLAAIRELRMITTNARKVSDAPTSLQEVERRVEGLRCHDRALRWNIL

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

AMP_A_3(4R78)
?
[Raw transfer]




53 HHSearch 81.2014% -17 - C5 -3TDW - ? -
8 Fugue 79.9315% -1 - C5 -1ZYL - SRKA_ECOLI -
45 HHSearch 74.3518% -26 - C5 -3DXQ - ? -
34 HHSearch 71.8516% -19 - C5 -1ZYL - SRKA_ECOLI -
44 HHSearch 70.6018% -28 - C- -3DXQ - ? -
41 HHSearch 69.4813% -12 * C5 *2PPQ - KHSE_AGRFC -
12 Fugue 69.0213% 5 - C5 -3I1A - ? -
10 Fugue 67.3910% -17 - C5 -3HAM - ? -
37 HHSearch 67.2613% 2 - C- -3N4U - ? -
9 Fugue 66.1713% -22 - C5 -3ATS - Y3168_MYCTU -
40 HHSearch 65.7513% 9 - C5 -3I1A - ? -
55 HHSearch 64.5212% -50 - C5 -5FTG - CHKA_HUMAN -
35 HHSearch 64.4916% 25 - C5 -4R78 3.9 ?
51 HHSearch 63.9612% -20 - C5 -3C5I - ? -
36 HHSearch 61.6416% 19 - C5 -4R7B - ? -
16 Fugue 61.4010% 6 - C5 -3JR1 - ? -
50 HHSearch 61.1019% -24 - C5 -5UXD - ? -
39 HHSearch 60.6514% -4 - C5 -6EF6 - ? -
21 Fugue 60.2612% -4 - C5 -2OLC - MTNK_BACSU -
47 HHSearch 60.1714% -20 - C5 -1NW1 - CKA2_CAEEL -