@TOME V3
(Apr 2019)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B9JPT8_AGRRK: (2019-01-26 )
MSAPTEEMISVQKLVERLNAEYAFEVDYIGADLGGFSSQNNQLTLKDKRRMVLKRCDQSQWDPRNVDIATILAHHSSLIYAPLATVGGSSTFKFDGWVYAVFPYVDGEKLHQHSLDAETLKSAARALYAFHHIAHFAGSHAAQRPNVSDFEREVTSVLEPTLSLSTDHADIIIRSIEAKRHILHSFSSDLSSINVGASSVIHGDFHNENILYRSDHVVAILDFEMLHWGNVEDDIISFIALGCCNNGFSEENLRMANIFVKEYLSLHGENLDLHTALLRFIHLKSSSLFLQKMLIYTGNMLYAQIIERDNKLFPSIMKKHREISKTLSSL

Atome Classification :

(23 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ANP_A_3(4OCV)
?
[Raw transfer]




AMP_A_3(4R78)
?
[Raw transfer]




MES_B_5(3I1A)
?
[Raw transfer]




EDO_A_10(5FTG)
CHKA_HUMAN
[Raw transfer]




EDO_A_16(3CSV)
?
[Raw transfer]




39 Fugue 80.9916% -39 * C5 *2PPQ - KHSE_AGRFC -
37 Fugue 75.2715% -43 - C5 -1ZYL - SRKA_ECOLI -
47 Fugue 75.1018% -25 - C5 -4OCV 3.5 ?
40 Fugue 71.1414% -16 - C5 -3I1A - ? -
20 HHSearch 68.9914% -11 - C5 -4OCV - ? -
18 HHSearch 67.7612% -39 - C5 -2Q83 - COTI_BACSU -
19 HHSearch 67.5315% -18 - C5 -3I1A 2.2 ?
38 Fugue 67.0512% -24 - C5 -2Q83 - COTI_BACSU -
24 HHSearch 66.5713% -11 - C5 -4WH3 - NAHK_BIFL2 -
23 HHSearch 64.6516% -26 - C5 -1ZYL - SRKA_ECOLI -
22 HHSearch 61.8115% -21 - C5 -2PPQ - KHSE_AGRFC -
54 SP3 57.4612% 14 - C5 -1NW1 - CKA2_CAEEL -
17 HHSearch 57.2912% -46 - C5 -4PDY - ? -
21 HHSearch 57.1512% -4 - C5 -6EF6 - ? -
1 PsiBlast_PDB 56.5022% -32 - C5 -1ZYL - SRKA_ECOLI -
51 Fugue 56.3610% -11 - C5 -1NW1 - CKA2_CAEEL -
42 Fugue 56.0812% -31 - C5 -2OLC - MTNK_BACSU -
49 Fugue 54.8813% -4 - C5 -3JR1 - ? -
36 HHSearch 52.7315% -24 - C5 -1ND4 - KKA2_KLEPN -
53 SP3 52.4011% -16 - C5 -1ND4 - KKA2_KLEPN -
25 HHSearch 51.2415% -23 - C5 -3CSV 2.7 ?
27 HHSearch 47.2215% 10 - C5 -4R78 3.9 ?
33 HHSearch 47.2015% 4 - C5 -5FTG 3.0 CHKA_HUMAN