@TOME V3
(Apr 2019)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : C1B3I2_RHOOB: (2019-01-26 )
MLRRAELDDDLGRRRAATPAPQRVEELLAVELPAVGEELDGAVVPIDYGTSTELTVTAPDLFAALSRHPRAGRIVASVGDVRRLSGGFSKEMLMARATYSDGSGERFVVRKVAPGRRADGLRAEYDVLSSAFHSGCPVPEPWWYDSEALGTPAIATSALSGTPAGDPNGWVAPPSSAVLASVARAAAQQHQVELAAFDANPLPPLISAEDRREALSERRAVLDGLWAEGDDAWAPAFNLVLNWLESAIPEPADPPVLVHGDFGPHNFLIEGDELSGILDWERSHAGLAVEDLAYLRPTLDDESWTAFMREYVAAGGREPSDDALVWYIVWQDFWRAVSAYRMRSLFLQSPDQVLYGISGLLLAPRFLTSAVRSVSSAHAVAGARAC

Atome Classification :

(21 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GDP_A_2(3TDW)
?
[Raw transfer]




ATP_A_8(3ATT)
Y3168_MYCTU
[Raw transfer]




ADP_A_7(1J7L)
KKA3_ENTFL
[Raw transfer]




AMP_A_3(4R78)
?
[Raw transfer]




GOL_A_6(3ATS)
Y3168_MYCTU
[Raw transfer]




ZIT_A_3(5IGI)
?
[Raw transfer]




48 HHSearch 71.0619% -36 - C3 -3DXP - ? -
31 Fugue 67.7015% -66 - C3 -2OLC - MTNK_BACSU -
36 Fugue 67.6214% -12 - C3 -1NW1 - CKA2_CAEEL -
25 Fugue 67.3114% -37 - C3 -1ZYL - SRKA_ECOLI -
21 Fugue 67.2318% 1 - C3 -3ATS 2.2 Y3168_MYCTU
51 HHSearch 65.7721% -7 - C3 -3ATS - Y3168_MYCTU -
52 HHSearch 64.7421% -4 - C3 -3ATT 4.7 Y3168_MYCTU
34 Fugue 61.2514% -23 - C3 -3I1A - ? -
58 HHSearch 59.7022% -34 - C3 -5IGH - ? -
67 HHSearch 59.6816% -16 - C3 -3TDW 5.8 ?
39 SP3 59.4211% -16 - C3 -1NW1 - CKA2_CAEEL -
22 Fugue 59.3016% -56 - C3 -1J7L 5.2 KKA3_ENTFL
32 Fugue 59.2322% -18 - C1 -1CJD - CAPSD_BPPRD -
57 HHSearch 59.2022% -39 - C3 -5IGI 3.7 ?
54 HHSearch 59.1216% -19 - C3 -2PPQ - KHSE_AGRFC -
47 HHSearch 57.3521% -20 - C3 -5UXD - ? -
26 Fugue 54.6312% -1 - C3 -3HAM - ? -
68 HHSearch 53.9414% -23 - C3 -3I1A - ? -
28 Fugue 53.8910% -16 - C3 -2QG7 - ? -
60 HHSearch 52.9816% -14 - C3 -1ZYL - SRKA_ECOLI -
50 HHSearch 49.5316% 18 - C3 -4R78 3.5 ?