@TOME V3
(Feb 2022)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : D3Q5J5_STANL: (2019-01-27 )
MRSDEASRFLAELGIADDSVTPITGGWASWTFATGSGRILRVARNPEIDAAHRRESRLLPELAEAVSFAVPAPTHFGVHKGMTYMVYPRLPGRGLEPGDRVRAVAPMLAELHAFPVDRAAELLGCAVTAEAWRDDYLEIGKWVEGEVLPVLDGELRDRVRREYDATLPDLAAISPALIHRDLGCEHILTDPETGMPTGIIDFETATVGDPAIDYVGLLVTFGEQVTRELIAASGSEISWRLVRFYHWLGAAHAVKYGLAERDDAIVADGIEGLRRRLPG

Atome Classification :

(27 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GNP_A_5(5IQC)
AACA_STAAU
[Raw transfer]




GNP_C_13(5IQI)
AACA_STAAU
[Raw transfer]




GDP_A_2(3TDW)
?
[Raw transfer]




ADP_A_7(1J7L)
KKA3_ENTFL
[Raw transfer]




ANP_A_3(3W0S)
KHYB_ECOLX
[Raw transfer]




ADP_A_6(2OLC)
MTNK_BACSU
[Raw transfer]




ADP_A_2(4DCA)
?
[Raw transfer]




AMP_A_3(4R78)
?
[Raw transfer]




ZIT_A_3(5IGI)
?
[Raw transfer]




EDO_A_16(3CSV)
?
[Raw transfer]




EDO_A_16(3CSV)
?
[Raw transfer]




1 PsiBlast_PDB 86.9428% -48 - C1 -3TDW - ? -
2 PsiBlast_PDB 86.9228% -43 - C1 -3TDV - ? -
64 HHSearch 79.6626% 7 * C1 *3TDW 6.0 ?
76 HHSearch 76.7622% -25 - C1 -4DCA 4.1 ?
7 PsiBlast_PDB 76.3628% -61 - C1 -5IGI - ? -
75 HHSearch 75.2921% -35 - C1 -3HAM - ? -
8 PsiBlast_PDB 74.3628% -48 - C1 -5IGJ - ? -
12 PsiBlast_PDB 74.0428% -50 - C1 -5IGT - ? -
9 PsiBlast_PDB 74.0228% -48 - C1 -5IGP - ? -
11 PsiBlast_PDB 73.7528% -48 - C1 -5IGS - ? -
10 PsiBlast_PDB 73.5228% -50 - C1 -5IGR - ? -
13 PsiBlast_PDB 72.1028% -43 - C1 -5IGH - ? -
72 HHSearch 71.6420% 3 - C1 -5IWU - ? -
73 HHSearch 71.2020% 8 - C1 -5UXA - ? -
4 PsiBlast_PDB 70.9322% 0 - C1 -3HAV - ? -
65 HHSearch 69.7819% -22 - C- -3N4U - ? -
68 HHSearch 69.1122% -2 - C1 -5IGI 4.6 ?
71 HHSearch 68.4717% -1 - C1 -5IQI 3.9 AACA_STAAU
3 PsiBlast_PDB 68.4522% 6 - C1 -3HAM - ? -
67 HHSearch 68.4023% -17 - C1 -5UXD - ? -
70 HHSearch 68.0317% -0 - C1 -5IQC 5.3 AACA_STAAU
78 HHSearch 65.0418% -30 - C1 -3W0S 4.1 KHYB_ECOLX
93 Fugue 61.0720% -11 - C1 -3CSV 2.9 ?
86 Fugue 59.9118% 4 - C1 -2OLC 4.4 MTNK_BACSU
77 HHSearch 58.0720% 7 - C1 -3CSV 2.9 ?
83 HHSearch 55.2216% -9 - C1 -4R78 4.4 ?
102 SP3 53.9515% 29 - C1 -1J7L 6.4 KKA3_ENTFL