@TOME V3
(Feb 2022)

Ref. - - Doc.
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Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : D4DJP3_TRIVH: (2019-01-27 )
MEEALARHDRFGEDFSKVFTIINSAEIPAVENSALYLFVGTSRAPDEASKYVRDRVAQNAQSSTLEETLHSIHEELKILSKKMTREDPMNLDPEIEAALYERDGGCCFITGRTAGVQPIYIIPPSILEDKDLQPGGYLRPLLEVSLTKEGTEQMLNLLGLPGRENVLKNLILMEPSIRYSFRHGYFEIIKSPYLEPPYLPTDAPKSKNGGWWLQPIAPQSEVPQIIPRNNELYKVPSTINPISHPLPARLLLKTHGIVSHPLHTIYIEEQIKAGWPVEPEPKELNWVGRLLLQILLRLIPNFARIRLYELIYKMVDYWDPSQKGSHVKFLPLGLVLKKGRENTENEAKALTLAEQYISISTPRLIDSVMVNKTSGFILMTKVVGRSLSSILHRITWEELEQIGKDLANFITELRRIPNSSKYLIADTRGGPISDHRFFYQTWGPFKTVSGFTDRLLQDVKGARDKPPLSFLYEKKHKVYFTHSDIHMTNLFVTCGRLSGVVDWENAGFKPEYWEYIRAMWAYGADKHAKCLYGSAFGDKYKEEGGIEITAVWIGFSLTTFSGFSGLIFEQLIRLRNEYLPLAQGKISPDVNPGHLCSTAKTSYTSAFARWEAVPARPMPTSQSGPITAKDAFKG

Atome Classification :

(26 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ADP_A_7(1J7L)
KKA3_ENTFL
[Raw transfer]




GDP_A_2(3TDW)
?
[Raw transfer]




ANP_A_2(3TM0)
KKA3_ENTFL
[Raw transfer]




ATP_A_8(3ATT)
Y3168_MYCTU
[Raw transfer]




ADP_A_4(1L8T)
KKA3_ENTFL
[Raw transfer]




ERY_A_5(5IWU)
?
[Raw transfer]




ADP_A_2(4DCA)
?
[Raw transfer]




48 Fugue 61.3020% 33 - C9 -5LB8 - RECQ5_HUMAN -
55 Fugue 57.8116% 19 - C3 -4CKB - MCEL_VACCW -
58 Fugue 53.4515% 15 - C6 -4TUU - PK3CA_HUMAN -
47 Fugue 52.4017% -2 - C9 -5UBP - ? -
31 HHSearch 47.9918%-107 - C9 -4GKI - ? -
62 SP3 47.879% 23 * C7 *1G5A - AMYS_NEIPO -
32 HHSearch 47.4318%-108 - C9 -4GKH - ? -
67 SP3 45.7211% 14 - C7 -1IWG - ACRB_ECOLI -
66 SP3 44.2411% 10 - C5 -1JRO - ? -
2 PsiBlast_PDB 43.4821% -26 - C9 -4FEW - ? -
1 PsiBlast_PDB 43.4321% -25 - C9 -4FEU - ? -
7 PsiBlast_PDB 43.1721% -22 - C9 -4EJ7 - ? -
4 PsiBlast_PDB 42.8921% -19 - C9 -4GKI - ? -
5 PsiBlast_PDB 42.7821% -23 - C9 -4FEV - ? -
3 PsiBlast_PDB 42.5621% -25 - C9 -4GKH - ? -
6 PsiBlast_PDB 42.2121% -23 - C9 -4FEX - ? -
68 SP3 40.609% 30 - C7 -1G5A - AMYS_NEIPO -
41 HHSearch 40.3516% -50 - C9 -3ATT 4.5 Y3168_MYCTU
29 HHSearch 39.8615% -34 - C9 -5IGH - ? -
30 HHSearch 39.8115% -2 - C9 -5IQI - AACA_STAAU -
38 HHSearch 36.1023% 19 - C9 -5IWU 4.4 ?
45 Fugue 35.1415% 17 - C9 -1J7L 5.2 KKA3_ENTFL
23 HHSearch 33.5715% -27 - C9 -3TDW 5.3 ?
36 HHSearch 30.5716% 20 - C9 -4DCA 3.9 ?
35 HHSearch 29.2816% -4 - C9 -1L8T 5.8 KKA3_ENTFL
34 HHSearch 28.5116% -2 - C9 -3TM0 3.5 KKA3_ENTFL