@TOME V3
(Feb 2022)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : F5YRU0_MYCSD: (2019-01-28 )
MSTIHDAIALAASHGLNLVPRGARVNDAGLDYRVVMASDEGGRRWVLRLPRRADVAAGMAAEARVLGLVGPVLAADGIAVPDWRIRSPELVAYPALTGAPGLTLNDDGRPDWHMDPASPDYAVRLGRLLARLHSITGEQAAAAGVEVRTPEQVRQSWRDDIAEVRSEFTVAPELAEAWQSWLADDTCWPDQTVMTHGEIYPAHVLLGEDGTLVGLLDWTTARVDDPARDLAAQYGAAGDEMLQTTVAAYAQAGGQVRPGLVAQTRRLWHAASIGYARYALTTRAEGDVAAAAAMLNPRSRRR

Atome Classification :

(22 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PGE_A_12(5UXC)
?
[Raw transfer]




GDP_A_2(5IGP)
?
[Raw transfer]




GDP_A_2(5IGR)
?
[Raw transfer]




GMP_A_2(5IGT)
?
[Raw transfer]




GMP_A_4(5IGS)
?
[Raw transfer]




GDP_A_2(5IGW)
?
[Raw transfer]




GOL_A_13(5UXC)
?
[Raw transfer]




GMP_A_2(5IGI)
?
[Raw transfer]




ZIT_B_10(5UXD)
?
[Raw transfer]




ZIT_A_3(5UXD)
?
[Raw transfer]




ZIT_A_3(5UXD)
?
[Raw transfer]




61 HHSearch 98.4548%-121 - C2 -5UXD 4.9 ?
1 PsiBlast_PDB 93.4548%-115 - C2 -5UXD 4.9 ?
21 Blastp_CBE 93.4149%-106 - C2 -5UXD 6.6 ?
2 PsiBlast_PDB 93.2148%-106 - C2 -5UXC 3.4 ?
3 PsiBlast_PDB 91.6448%-106 - C2 -5UXB - ? -
4 PsiBlast_PDB 81.5742% -64 - C2 -5IGI - ? -
7 PsiBlast_PDB 81.5442% -65 - C2 -5IGR 4.6 ?
8 PsiBlast_PDB 81.5042% -64 - C2 -5IGS 4.4 ?
6 PsiBlast_PDB 80.9842% -62 - C2 -5IGP 4.5 ?
9 PsiBlast_PDB 80.7142% -65 - C2 -5IGT 4.4 ?
5 PsiBlast_PDB 80.4942% -64 - C2 -5IGJ - ? -
10 PsiBlast_PDB 80.0842% -63 - C2 -5IGH - ? -
62 HHSearch 80.0635% -34 * C2 *5IWU - ? -
63 HHSearch 79.3935% -27 - C2 -5UXA - ? -
17 PsiBlast_PDB 79.2836% -40 - C2 -5UXA - ? -
11 PsiBlast_PDB 79.1736% -36 - C2 -5IGV - ? -
14 PsiBlast_PDB 79.0236% -32 - C2 -5IGZ - ? -
13 PsiBlast_PDB 78.6836% -32 - C2 -5IGY - ? -
18 PsiBlast_PDB 78.3336% -36 - C2 -5IH0 - ? -
16 PsiBlast_PDB 78.2336% -35 - C2 -5IWU - ? -
64 HHSearch 77.8940% -29 - C2 -5IGI 4.2 ?
12 PsiBlast_PDB 75.8136% -15 - C2 -5IGW 4.0 ?