@TOME V3
(Feb 2022)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : V4IJZ3_9ACTN: (2019-02-02 )
MAACSLSPVVRWDVSEVGYDDCNIMADTRDGRYVVKIFHTSRSPALCARYVDVVRRVTEAGVAHPRLHRAEGSALLHHRPTGNRLMVMDRVEGITFLDADACPDDTELASVVEQTYRIHALDLYPEYVHDWWAIPQIATLAAEVAHLLTPGDQDRVAAAVETFGRLRVGTLPQVFSHGDLTKANLLRTPCGVPAVLDLAVSNRYARVHDLSMLAVNVLHGSPRPLPERVALLTGLYARHAPLTAAEHAALPGYVLAAAAMELLGAEREWSQGNRSEETRYLRELGRTTLRAAADWALVPALSTSRTRNRAPQDAPHTDERNPMTGPASPVNSWDEFTQLREIIVGDAAHARIPRMTDPSAWLACYPTMTPAELKRVEAGKFPRQVVEESDEDLAQLTKTLRGLGVTTHRPPAVDHSRSFSSPYWEADGYISYCPRDITLVAGSTLIEVASPMRSRYFELFNLRPLFQQYMLEGATWIAAPRPQLRDELYTRDEESRPLLGEAEPVFDAANVLRVGQDFFYQVSRSGNERGLDWLRSTLRLVDPTVRVHPLRDVYGYTHIDSTITVLRPGLVMLNPARIARDEVPEAFRGWDVLWCPEPRPTETALPYHLSEPWISMNLLMVNPELAIADSDQPELLRALEAKGISVLPHRLRHQRVLGGGFHCVTLDIARDGLREDYFG

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ORN_C_3(3JDW)
GATM_HUMAN
[Raw transfer]




ARG_A_2(4JDW)
GATM_HUMAN
[Raw transfer]




ABA_C_3(9JDW)
GATM_HUMAN
[Raw transfer]




NVA_C_3(1JDX)
GATM_HUMAN
[Raw transfer]




ABU_C_3(6JDW)
GATM_HUMAN
[Raw transfer]




DAV_C_3(7JDW)
GATM_HUMAN
[Raw transfer]




ALA_C_3(8JDW)
GATM_HUMAN
[Raw transfer]




BME_C_3(1JDW)
GATM_HUMAN
[Raw transfer]




BME_C_3(1JDW)
GATM_HUMAN
[Raw transfer]




GLY_C_3(5JDW)
GATM_HUMAN
[Raw transfer]




GLY_C_3(5JDW)
GATM_HUMAN
[Raw transfer]




1 PsiBlast_PDB 90.8143% -94 - C4 -1BWD - STRB1_STRGR -
43 Fugue 87.7643% -24 - C4 -1BWD - STRB1_STRGR -
58 SP3 82.5022% -91 - C4 -1BWD - STRB1_STRGR -
22 HHSearch 80.6842% 17 - C4 -1BWD - STRB1_STRGR -
3 PsiBlast_PDB 79.1232% -30 - C4 -2JDX - GATM_HUMAN -
11 PsiBlast_PDB 78.2332% -24 - C4 -8JDW 4.2 GATM_HUMAN
6 PsiBlast_PDB 78.1732% -23 - C4 -3JDW 2.5 GATM_HUMAN
12 PsiBlast_PDB 78.0832% -23 - C4 -9JDW 2.2 GATM_HUMAN
24 HHSearch 77.8332% 13 - C4 -5WPI - ? -
10 PsiBlast_PDB 77.7832% -26 - C4 -7JDW 2.1 GATM_HUMAN
7 PsiBlast_PDB 77.5332% -22 - C4 -1JDX 2.9 GATM_HUMAN
9 PsiBlast_PDB 77.3732% -24 - C4 -6JDW 3.4 GATM_HUMAN
13 PsiBlast_PDB 76.9531% -23 - C4 -4JDW 3.8 GATM_HUMAN
5 PsiBlast_PDB 76.8432% -26 - C4 -2JDW - GATM_HUMAN -
8 PsiBlast_PDB 76.7232% -26 - C4 -5JDW 3.3 GATM_HUMAN
4 PsiBlast_PDB 76.0632% -25 - C4 -1JDW 2.9 GATM_HUMAN
21 Blastp_CBE 74.0931% 9 - C4 -5WPI - ? -
2 PsiBlast_PDB 73.9730% 8 - C4 -5WPI - ? -
25 HHSearch 73.0831% 17 - C4 -5JDW 3.4 GATM_HUMAN
23 HHSearch 72.8331% 14 - C4 -1JDW 2.9 GATM_HUMAN