Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMSPIVIKPDLAIDLATAGAVVARTGVDG-QIAAISLLYGGEISAVYELALAGGLPPLVLKIYPDSM-SWKMRKEARMLDLVRDRLPVPAPRLHLADASRDLIGLDYVVMSRLAGDRLGPL-EQQLPPPLRQSAFRQVGRLSRAFHDIAMEAFGYIGPDGVWTAHADNRTYLTVQFDRKLTEFSSRGGAPDLALRIARHVEACSGL-FEACAAPVLCHNDLHPGNILARAD--DDTVTLTGVVDFEGALAGDPLKDVAKALYYLSAGQREAFLEGYGPMTRTE-VGATLDIYRLLFSLELWCWYAQFDATDKLAPLIADMELLLRSQ
3TDW Chain:A ((4-298))------------NKLHYTTMIM-TQFPDISIQSVESLGEGFRNYAILV----NG-DWVFRFPKSQQGADELNKEIQLLPLLVGCVKVNIPQYVYIGKR--SDGNPFVGYRKVQGQILGEDGMAVLPDDAKDRLALQLAEFMNELSAFPVETAISAGVP--VTNLKNKILLLSEAVEDQ----VFPLLDESLRDYLTLRFQSYMTHPVYTRYTPRLIHGDLSPDHFLTNLNSRQT--PLTGIIDFGDAAISDPDYDYVYLLEDCGEL-FTRQVMAYRGEVDLDTHIRKVSLFVTFDQVSYLLEGLRARDQDWISEGLELLEEDKA--


General information:
TITO was launched using:
RESULT:

Template: 3TDW.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1291 -13088 -10.14 -45.44
target 2D structure prediction score : 0.59
Monomeric hydrophicity matching model chain A : 0.64

3D Compatibility (PKB) : -10.14
2D Compatibility (Sec. Struct. Predict.) : 0.59
1D Compatibility (Hydrophobicity) : 0.64
QMean score : 0.369

(partial model without unconserved sides chains):
PDB file : Tito_3TDW.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3tdw-query.scw
PDB file : Tito_Scwrl_3TDW.pdb: