Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMEDKKMLHILNNLYNINFKTMEFLREGGCISYRLSS-ENS-SYFMKIISSAFMDTAKQSLSIISYLTQKGFP-SPRIIHTKEGLPYVEIEELNKKTLIVLFEFIEGSEPN--EGEDIETIGKLVGQLHNILKGYKEPL-PVHGKEFFIDR---YIKILEQKN---Y--D--QN-------KIDTFRE----YGDVLWE-----N--VKNLPHGFCHGDLHRGNLLKTTTKKYYLLDFDTSSYAFPMYDIMVMCNSTDYFNFNEIGYQKSKNTYETFLKGYTKYRSLSKDELNSFYDFIAI-YHYQLQAT-IIEIYGLNCVDIEFLDNQLNWLMKWREQCKAR
4PDY Chain:A ((27-317))---------VVSKYDLAIQQR-----HADGNIEVWTDSKGRRYAAKRSSIA-PAHCRIMVQCLRHAQEQGFTKFARFVTTSSNAPYVRHG----DFTYYVTEWVSGQPANFGLPEHVAQTAYTLAQFHEATRSFRTDWK-----DDVFGLFQARWRDLRQMWLGADRKREKDAFDQLLLSMRDELHRDAAESLALFEDRDVIAYLEAERSSGGWCHLDVIPSNCLYTPQHQVVLIDFELARPAPRALDMAHLLRRSLERG------NWDGHLAYACFLHFDAVRNIPKSEYRAVEAILRFPYLPWRIAHARYHFAA--------------------------


General information:
TITO was launched using:
RESULT:

Template: 4PDY.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1032 5603 5.43 22.41
target 2D structure prediction score : 0.59
Monomeric hydrophicity matching model chain A : 0.66

3D Compatibility (PKB) : 5.43
2D Compatibility (Sec. Struct. Predict.) : 0.59
1D Compatibility (Hydrophobicity) : 0.66
QMean score : 0.350

(partial model without unconserved sides chains):
PDB file : Tito_4PDY.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4pdy-query.scw
PDB file : Tito_Scwrl_4PDY.pdb: