Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMDESGGEARAYMLGSGIVVKTQRPHRLRPRTSLEKEAHVLSLLAGPLAGRIPRLFGYGREDTAAGPVEFLVMSRIRGCAALHAGL-----PAREALLASLADVLRSVHAADVTGLRDSGLL----PADVDSAALRGRLQLGFADACDGFAAHRDRYAGAGAPERIAIAAVDALAG--LTDESPVLLHSNPGPTHV-FVGDGGLCTGLIDFGDAYASHPALDLRSWPDPADRIVLHEAYTGGRPTTRGFDAVWTVVMILADLNAMLHRADLAEAAGRDLALRLAQL
5C4L Chain:A ((50-252))---KGNDCIAYEINRDFIFKF--PKHSRGSTNLFNEVNILKRIHNKLPLPIPEVVFTGMP-SETYQMSFAGFTKIKGVPLTPLLLNNLPKQSQNQAAKDLARFLSELHSINISGFKSNLVLDFREKINEDNKKIKKLLS---------------RELKGPQMKKVDDFYRDILENEIYFKYYPCLIHNDFSSDHILFDTEKNTICGIIDFGDAAISDPDNDFIS-------------------------------------------------------------


General information:
TITO was launched using:
RESULT:

Template: 5C4L.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 656 -22344 -34.06 -116.98
target 2D structure prediction score : 0.55
Monomeric hydrophicity matching model chain A : 0.67

3D Compatibility (PKB) : -34.06
2D Compatibility (Sec. Struct. Predict.) : 0.55
1D Compatibility (Hydrophobicity) : 0.67
QMean score : 0.226

(partial model without unconserved sides chains):
PDB file : Tito_5C4L.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-5c4l-query.scw
PDB file : Tito_Scwrl_5C4L.pdb: