Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMPTLFEGETPVDLDTVGSFVAQQCPQW------GHLPLRAMTTSGTEHTTYRLG------------DELLVRVPRDASSEAGLRKEIDWLPRLRDGVDLEMPVIEHVGAPSLDYPHTWTINRWVSGEDASARVLAGDVPSSWADVLAELVASLRAVDLREFAPHELPQGQRGGHVRCRVEALHGQTDP-----MSGP-------L-DPTPVMGLMEAALDAGAPAPEPVLLHGDLIPGNLVVRNGRLSGLLDFGTLTTGYAAWDLTPAWWVL--------------------DRSGRERFRELLE--VD-----------DVSWAWGRAFAASQGLLADWVYAPRGHALAPLGARAVAEALAD
1NW1 Chain:B ((52-394))-----------LKERAHMLCARFLGGAWKTVPLEHLRISRIK-GGMSNMLFLCRLSEVYPPIRNEPNKVLLRVYFNPETESHLVAESVIFTLLSER-HLG-PKLYGIFS-------GGRLEEYIPSRPLSCHEIS---LAHMSTKIAKRVAKVHQLEVPI-WKEPD---YLCEALQRWLKQLTGTVDAEHRFDLPEECGVSSVNCLDLARELEFLRAHIS--LSKSPVTFCHNDLQEGNILLPK--RLVLIDFEYASYNYRAFDFANHFIEWTIDYDIDEAPFYKIQTENFPENDQMLEFFLNYLREQGNTRENELYKKSEDLVQETLPFVPVSHFFWGVWGLLQ------------------


General information:
TITO was launched using:
RESULT:

Template: 1NW1.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain B - contact count / total energy / energy per contact / energy per residue : 1018 -5977 -5.87 -24.00
target 2D structure prediction score : 0.58
Monomeric hydrophicity matching model chain B : 0.64

3D Compatibility (PKB) : -5.87
2D Compatibility (Sec. Struct. Predict.) : 0.58
1D Compatibility (Hydrophobicity) : 0.64
QMean score : 0.282

(partial model without unconserved sides chains):
PDB file : Tito_1NW1.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1nw1-query.scw
PDB file : Tito_Scwrl_1NW1.pdb: