Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMHSRPQISPERAAQLAAEWFEGQLDAPAELDSYADRNFLVRAPDGTKAVLKVPNVELAEDIDLQIAILKWLEARPSAPLVPRVLGPTRTIEDDAGRPTRAWMVGWIEGELWFDASPTPALREELGAALGQLARDLEDFRHPGMERHFAWNLAEANWIAEELHRFEDPARAELVCDALMQFQGRVLPRLAELPTQVIHGDANDKNLAVAEGRLVGVFDFGDACWCPAVCDLAIALAYAAMDLRLGCALPEVAAACAQVCAGYHGRRPLTALELDLLYDLLRARLAVSVTSSTRAREAEPDNAYVSASEQGAWSVLEALGAVGRRAFTATVAEACGLALAPRVPGARTGDELLAARRRRLGPSLSLSYASSGMPLYIRRGEGSWLFDE---HDQAFLDCVNNV--CHVGHCHPRVVEAGAAQMARLNTN--TRYLHEGLVDYAEALCATLPAPLEVVYLVNSGSEANELALRLARDY------TGGFDVAVLDAAYHGNTGNLVDMSPYKFDAPGGR--GRREWVHVLPTPDPYRGAHGDDGPAYAAALDAADAAARGRGSRLAALFCESV-LGCAGQVVPASGFLAAAYARARAAGAVCIADEVQVGFGRVGDGMWAFEAEGVVPDILTLGKPIGNGH-PLGAVVTTRAIAEALGGG---RMEFFCTFGGNPVSAAVGAAVLAVIEDEGLVANARDTGSWLRGAFEQLAADPVLGRGIGEVRGRGLFIGVELVEDRSTKRPDAARASAIVAHARARGVLLSTDGPARNVIKIKPPICFADVEARILASTLARALSATMR
4WYD Chain:A ((54-454))----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SPVVAVAAHGAWLTLIRDGQPIEVLDAMSSWWTAIHGHGHPALDQALTTQLRVMNHVMFGGLTHEPAARLAKLLVDITPAGLDTVFFSDSGSVSVEVAAKMALQYWRGRGLPGKRRLMTWRGGYHGDTFLAMSICDPHGGMHSLWTDVLAAQVFAPQVPRDYD-------PAYSAAFEAQL---AQHAGELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTG-ALFAADHAGVSPDIMCVGKALTGGYLSLAATLCTADVAHTISAGAAGALMHGPTFMANPLACAVSVASVELLLGQDWRTRITELAAGLTAGLDTARA----LPAVTDVRVCGAIGVIECDRPV--------DLAVATPAALDRGVWLRPFR---NLVYAMPPYICTPAEITQITSAMVEVARLVG-


General information:
TITO was launched using:
RESULT:

Template: 4WYD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 2186 -130124 -59.53 -341.53
target 2D structure prediction score : 0.66
Monomeric hydrophicity matching model chain A : 0.62

3D Compatibility (PKB) : -59.53
2D Compatibility (Sec. Struct. Predict.) : 0.66
1D Compatibility (Hydrophobicity) : 0.62
QMean score : 0.231

(partial model without unconserved sides chains):
PDB file : Tito_4WYD.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4wyd-query.scw
PDB file : Tito_Scwrl_4WYD.pdb: