Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMPTLFEGETPVD-LDTVGSFVAQQCPQWGHLPLRAMTTSGTE-HTTYRL---GDELLVRVPRDASSEAG-LRKEIDWLPRLRDGVDLEMPVIEHVGAPSLDYPHTWTINRWVSGEDASARVLAGDVPSSWADVLAELVASLRAVDL-----REFAPHELPQGQRGGHVRCRVEA-LHGQTDPMSGPLDPTPVMGLMEAALDAGAP--APEPVLLHGDLIPGNLVVRNGRLSGLLDFGTLTT-GYAAWDLTPAWWVLDRSGRERFRELLEVDDVSWAWGRAFAASQGLLADWVYAPRGHALAPLGARAVAEALAD
3JR1 Chain:A ((14-309))------NLYFQGMWKSISQVLAEQFGA-YYFIKHKEKLYSGEMNEIWLINDEVQTVFVKINE--RSYRSMFRAEADQLALLAKTNSINVPLVYGIGNSQ---GHSFLLLEALNKSKNKQ-----SSFTIFAEKIAQLHQIQGPDKYGLDFDTWLGPIYQPNDWQTSWAKFFSENRIGWQLQICKEKGLIFGNIDLIVQIVADTLSKHNPKPSILHGNLWIENCIQVDD-KIFVCNPACYWGDRECDIAFSSLFEPFPTNFYQRYNEIYPLEEGYLERKLIYQLYYLLNFSYRYYNKKQSYVSLTQKLINQILHK


General information:
TITO was launched using:
RESULT:

Template: 3JR1.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1378 17612 12.78 62.68
target 2D structure prediction score : 0.52
Monomeric hydrophicity matching model chain A : 0.66

3D Compatibility (PKB) : 12.78
2D Compatibility (Sec. Struct. Predict.) : 0.52
1D Compatibility (Hydrophobicity) : 0.66
QMean score : 0.343

(partial model without unconserved sides chains):
PDB file : Tito_3JR1.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3jr1-query.scw
PDB file : Tito_Scwrl_3JR1.pdb: