Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequence---MAKPELIELATSCFGLT--VDEQLPIGESFASEVLRFRSGRQCYVLK--RPFSLEKAEREYFWLKR-----LSHCPFVPDALEITKANDHGLILMTSLEGMPLKSFHQLSHRDLSKLGHDLRALHTVSADSFDGHK--------SWRELLLSNTDRYI-----DKIIGPARKTAEMAYARFHEGIDEIPDSYLP--------TATHFDFRDGNILADESGYTGIIDFESMRGGHASMDFFKLLTHPSDM--NDIELTALLAGYGSADW-LESMAQLKHLVACYAVYHGLAGLAWCSQREQTSTEFYQRCAGFLEQGR---------
3I1A Chain:A ((3-330))KQPIQAQQLIELLKVHYGIDIHTAQFIQGGADTNAFAYQADSESKSYFIKLKYGYHDEINLSIIRLLHDSGIKEIIFPIHTLEAKLFQQLKHFKIIAYPFIHAPNGFT-QNLTGKQWKQLGKVLRQIHETSVPISIQQQLRKEIYSPKWREIVRSFYNQIEFDNSDDKLTAAFKSFFNQNSAAIHRLVDTSEKLSKKIQPDLDKYVLCHSDIHAGNVLVGNEESIYIIDWDEPMLAPKERDLMFIGGGVGNVWNKPHEIQYFYEGYGEINVDKTILSYYRHERIVEDIAVYGQDLLSRNQNNQSRLESFKYFKEMFDPNNVVEIAFATE


General information:
TITO was launched using:
RESULT:

Template: 3I1A.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1235 24079 19.50 85.08
target 2D structure prediction score : 0.65
Monomeric hydrophicity matching model chain A : 0.67

3D Compatibility (PKB) : 19.50
2D Compatibility (Sec. Struct. Predict.) : 0.65
1D Compatibility (Hydrophobicity) : 0.67
QMean score : 0.439

(partial model without unconserved sides chains):
PDB file : Tito_3I1A.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3i1a-query.scw
PDB file : Tito_Scwrl_3I1A.pdb: