Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMPINHEPLFDVLSQYDIKVVSIRNESYKDKKGVWWIQTPDE-YKILKKISNSEDTFKYILSAAEHLRKNGVN-IPAVYKTKDGKDYVNINGTCYVLYEAVEGKNPSYNSPEDFRAIVRELAGFHAASVGFSPPDNTKPKIHLGKWVEQYTEQVEDMNRFYQTELEKSENDRIGKVIIEEFPAFYERAKQAIEGLKGKEYQDWVEKVKSRGGLCHQDFAAGNLLKNPSGKIFVLDTDSITIDIPARDIRKLLNKIMKKNGKWDLEILRKFIRIYQSENPLSFSEWTVVKFDLMFPHLFLGAMNKFYYKRDKEWSFEKYLKRINEMTALEKTITPVLENFDSIVYEEINQRKD
4PDY Chain:A ((23-347))------IPQAVVSKYDLA-----IQQRHADGNIEVWTDSKGRRYAAKRSSIAPAHCRIMVQCLRHAQEQGFTKFARFVTTSSNAPYVRHGDFTYYVTEWVSGQPANFGLPEHVAQTAYTLAQFHEATRSFRTDWK-------DDVFGLFQARWRDLRQMWLGADRKREKDAFDQLLLSMRDELHRDAAESLALFEDRDVIAYLEAERSSGGWCHLDVIPSNCLYTPQHQVVLIDFELARPAPRALDMAHLLRRSLERGN-WDGHLAYACFLHFDAVRNIPKSEYRAVEAILRFPYLPWRIAHARYHFA----ADPSQLDALQQYAVQAEKRQAFLASLRQQVE--------


General information:
TITO was launched using:
RESULT:

Template: 4PDY.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1516 42753 28.20 134.44
target 2D structure prediction score : 0.77
Monomeric hydrophicity matching model chain A : 0.71

3D Compatibility (PKB) : 28.20
2D Compatibility (Sec. Struct. Predict.) : 0.77
1D Compatibility (Hydrophobicity) : 0.71
QMean score : 0.523

(partial model without unconserved sides chains):
PDB file : Tito_4PDY.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4pdy-query.scw
PDB file : Tito_Scwrl_4PDY.pdb: