Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequence-----MNRLHAFIDLD-----RGAVADLTADYSLGEL-------RSVEPLVTGIINTNYVLRTDAGD---------FLLRLYPPERSADALRFEFSTLARLAEANFPCPRVIANREGKTVAWSEAHARHYAVLEFIPGTTLPREAI-DAGVVDQIGSLFADMQRTLSGFVPEGDKPRADLEFVRELGQATLDRIAALPGEGPATAERLRQV-WARSHARFDQPKGSVPALER--GVVHADLYFDNVIVEGDQIRGVIDFDDSYFGLFLIDLAVTLMEFTFVEADA------------LDFELGERLLRRYYARRPEAKGEAHLLHDGMICACYKYLGYTADLPEYAGEALLGNEYIARIDYLARPEIRAKVEAMIAAAVEVPA
1NW1 Chain:A ((32-426))GMKELLSTMDLDTDANTIPELKERAHMLCARFLGGAWKTVPLEHLRISRIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLRVYFNPETESHLVAESVIFTLLSERHL-GPKLYGIFSG------------GRLEEYIPSRPLSCHEISLAHMSTKIAKRVAKVHQLEVPIWKE---PDYLCEALQRWLKQLTGTVDAEHRFDLPEECGVSSVNCLDLARELEFLRAHISLSKSPVTFCHNDLQEGNILLPKR--LVLIDFEYASYNYRAFDFANHFIEWTIDYDIDEAPFYKIQTENFPENDQMLEFFLNYLREQGNTRENELYKKSEDLVQETLPFVPVSHFFWGVWGLLQVELSPVGFGFADYGRDRLSLYFKHKQLLKNLA


General information:
TITO was launched using:
RESULT:

Template: 1NW1.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1440 4060 2.82 12.57
target 2D structure prediction score : 0.59
Monomeric hydrophicity matching model chain A : 0.66

3D Compatibility (PKB) : 2.82
2D Compatibility (Sec. Struct. Predict.) : 0.59
1D Compatibility (Hydrophobicity) : 0.66
QMean score : 0.394

(partial model without unconserved sides chains):
PDB file : Tito_1NW1.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1nw1-query.scw
PDB file : Tito_Scwrl_1NW1.pdb: