Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMFDNPDRSQNWSKTGKIADSSDLLPRFPELQRQPCQITSLGSAGGLSGGAIWRIECDRRLYALRRWPAETTSARLRYVHSLQRLWRESNLKFIPELYTTAEGESFTENALGFWELAEWMPGAALEGDTISPQQRDAVAAAIAAIHQAA-AQHESSLEPSPGLRQRLTMLQRWRTMDRTMLQDAIQRLGWPEFAAIAQQMLQSFAYAANTIGDELQAIVSTPLPLHACLRDIHREHIFLTGALVSGVLDFGAVRIESRAGDLARLCGSLFEDD----R-NRWDDFLARYERLRPLSAAERRAIAVFDRSAVLLTGLQWIEWIAL---ER--RQF--PDPAAVLSRLDISLRRLQFLLK
2PPQ Chain:A ((5-315))-----------T-DITEDELRNFLTQYDV-G-S--LTSYKGIAE---N-SNFLLHTTKDPLILTLYEK---KNDLPFFLGLMQHLAAKGLS-CPLPLPRKDGELLGELSGRPAALISFLEGMWLRK--PEAKHCREVGKALAAMHLASEGFEIKR-PN-AL------SVDGWKVLWDKSE-E---R-----ADEVEKGLREEIRPEIDYLAA---HWP-KDLPAGVIHADLFQDNVFFLGDELSGLIDFYFACNDLLAYDVSICLNAWCFEKDGAYNVTKGKALLEGYQSVRPLSEAELEALPLLSRGSAL---RFFLTRLYDWLTTPAGALVVKKDPLEYLRKLRFHRTIANVA--


General information:
TITO was launched using:
RESULT:

Template: 2PPQ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1381 -95704 -69.30 -327.75
target 2D structure prediction score : 0.46
Monomeric hydrophicity matching model chain A : 0.66

3D Compatibility (PKB) : -69.30
2D Compatibility (Sec. Struct. Predict.) : 0.46
1D Compatibility (Hydrophobicity) : 0.66
QMean score : 0.329

(partial model without unconserved sides chains):
PDB file : Tito_2PPQ.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-2ppq-query.scw
PDB file : Tito_Scwrl_2PPQ.pdb: