Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)


Input alignment information:
Query sequenceMSISEVQHQLNLTSYLNQQATVSVFLGVKEIQIDQVQQLATHTYKLTFKNSNKKIILHTKSSNAQVTGNQLEKDYMIAQKLSAANMPVPKALFYCGDQSIVGVPFYATEYVEGRLFNDKKLLSVSQTEKKLLFQEVSKALAHLHSISLNYLGLGELESQTSQYQTLNKKLYNLYKLHETKISTNVEDLLYWLSLNSPVKSELDNLCLVHGDFSLSKVVFHPTEPKVLAILDWQQAQLGNAFIDLASFVSPYYIPYSNGQHQIDGWFGIEEIIAQPNLQEVLSAYFTTRSSETTQDINYQLVISLLKQSIDQQILYKQTKEEKYQDNSHFISKAGYELLLRTTEGDPFGIKLRANNDGQLWSNWPVSQRCKSYYYRIKDFMKDEIFPVEKAILDKARAVPRTVKNKPIVEIEELQRKAKAVGLWNLFISDPMYGKGLTN---LEYVYLSELMGLSYLAHEVFNCFAPETGNIKLLIAYGTPHQKEKYLKPLLEGQCKSFFAMTEKDVPSSDPNNFQCTITPTEGGFILNGGKWFVSSAPDERAIFGIVMGKSSKDMSNPIESQSMILVDMNNPKIKIVRQYSVLGFFDVPHGYSEVEFDNAFIPQENLLGQLGGAFKMAQGRLLGGRLHHCVRQIGLTRRCLDLMMARSEKRIIFKQSLKDNAAFQERLGDLEIAFQSCRLLSLNAGLLLDSAGSRHLHTFMAVSECKAHIPKACQYIIDQCIQAFGAEGVTEEQPLTLAYRFARAIRFMDGPCEIHLRQISRFAYGNHLFNDLNNAQGYGLAKL
3MDD Chain:A ((1-385))-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GFSFELTEQQKEFQATARKFAREEIIPVAAEYDRT----------GEYP--VPLLKRAWELGLMNTHIPESFGGLG---LGIIDSCLITEELAYGCTGVQTAIEANT-LG-QVPLIIGGNYQQQKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKG-DEYIINGQKMWITNGGKANWYFLLARSDPDPK-APASKAFTGFIVEADTPGVQIGRKEINMGQRCSD--TRGIVFEDVRVPKENVLTGEGAGFKIAMGTFDKTRPPVAAGAVGLAQRALDEATKYALERKTFGKLLAEHQGISFLLADMAMKVELARLSYQRAAWEIDS----GRRNTYYASIAKAYAADIANQLATDAVQVFGGNGFNTEYPVEKLMRDAKIYQIYEGTAQIQRIIIAREHIGRYK---------------


General information:
TITO was launched using:
RESULT:

Template: 3MDD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output 		Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 2178 -52734 -24.21 -138.05
target 2D structure prediction score : 0.66
Monomeric hydrophicity matching model chain A : 0.61

3D Compatibility (PKB) : -24.21
2D Compatibility (Sec. Struct. Predict.) : 0.66
1D Compatibility (Hydrophobicity) : 0.61
QMean score : 0.213

(partial model without unconserved sides chains):
PDB file : Tito_3MDD.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3mdd-query.scw
PDB file : Tito_Scwrl_3MDD.pdb: