Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMSAPTEEMISVQKLVERLNAEYAFEVDYIGADLGGFSSQNNQLTLKDKRRMVLKRCDQSQWD-P-RNVDIATILAHHSSLIYAPLATVGGSSTFKFDGWVYAVFPYVDGEKLHQHSL-DAETLKSAARALYAFHHIAHFAGSHAAQRPNVSDF-EREVTSVLEPTLSLSTDHADIII-RSIEAKRHILHSFSSDLSSINVGASSVIHGDFHNENILYRSDHVVAILDFEMLHWGNVEDDIISFIALGCCNNGFSEENLRMANIFVKEYLSLHGENLDLHTALLRFIHLKSSSLFLQKMLIYTGNMLYAQIIERDNKLFPSIMKKHREISKTLSSL
1ND4 Chain:A ((10-247))-----------GSPAAWVERLFGYD--WAQQTIGCSDAAVFRLSAQGRPVLFVKTDLSGALNELQDEAARLSWLATTGVPCAAVLDVVTE------AGRDWLLLGEVPGQDLLSSHLAPAEKVSIMADAMRRLHTLDPATCPFDHQAKHRIERARTRMEAGLV-D---QDDLDEEHQGLAPAELFARLKAR---M--PDGEDLVVTHGDACLPNIMVENGRFSGFIDCGRLGVADRYQDIALATRDIAEEL-----GGEWADRFLVLYGIA----------------------------------------------------------------


General information:
TITO was launched using:
RESULT:

Template: 1ND4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1059 -25528 -24.11 -109.56
target 2D structure prediction score : 0.59
Monomeric hydrophicity matching model chain A : 0.60

3D Compatibility (PKB) : -24.11
2D Compatibility (Sec. Struct. Predict.) : 0.59
1D Compatibility (Hydrophobicity) : 0.60
QMean score : 0.198

(partial model without unconserved sides chains):
PDB file : Tito_1ND4.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1nd4-query.scw
PDB file : Tito_Scwrl_1ND4.pdb: