Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMAKPELIELATSCFGL-TVDEQLPIGESFASEVLRFRSGRQCYVLKRPFSL---EKAEREYFWLKRLSH--CPFVPDALEITKA---NDHGLILMTSLEGMPLKSFHQ------LSHRDLSKLGHDLRALHTVSADSFDG--HKSWRELLLSNTDRYIDKIIGPARKTAEMAYA-RFHEGIDEI-PDSYLPTATHFDFRDGNILADE--SGYTGIIDFESMRGGHASMDFFKLLTHPSDMNDIELTALLAGYGSADWLESMAQLKHLVACYAVYHGLAGLAWCSQREQTSTEFYQRCAGFLEQGR
3N4U Chain:A ((4-298))YTFDQVEKAIEQLYPDFTINTIEISGEGNDCIAYEI---NRDFIFKFPKHSRGSTNLFNEVNILKRIHNKLPLPIPEVVFTGMPSETYQMSFAGFTKIKGVPLTPLLLNNLPKQSQNQAAKDLARFLSELHSINISGFKSNLVLDFREKINEDNKKIKKLLSRELKGPQMKKVDDFYRDILENEIYFKYYPCLIHNDFSSDHILFDTEKNTICGIIDFGDAAISDPDNDFISLMEDDEEYGMEFVSKILNHYKHK---DIP-TVLEKYRMKEKYWSFEKIIYGKEYG--YMDWYEEGLNEIRSI-


General information:
TITO was launched using:
RESULT:

Template: 3N4U.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1206 19803 16.42 72.27
target 2D structure prediction score : 0.68
Monomeric hydrophicity matching model chain A : 0.68

3D Compatibility (PKB) : 16.42
2D Compatibility (Sec. Struct. Predict.) : 0.68
1D Compatibility (Hydrophobicity) : 0.68
QMean score : 0.428

(partial model without unconserved sides chains):
PDB file : Tito_3N4U.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3n4u-query.scw
PDB file : Tito_Scwrl_3N4U.pdb: