Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMNQAQFEKVIEVLFPDIIIQEVTAYEKGWDNDIFIVNKEIVFRFPRSEEVASKVKDEIILLKHLAHKEPKLDIPRYKGIEM-DGNLKCVKYNFMKGKSLSEIKN---SR-LDLHSAELLGDFLSRLHSIELSALKETNITSFHTDTYWENLYESA----KTYVFPNITHSERAEIQQFYEDFSNNPIYSNVNKAVIHGDLTAANILYNKE--EECVSGIIDFTDAQIADPAFDFAGLYWAYGPEFTKKLLTYYDGKD-KTGIFERVQSFYGLQPIFHELIYAVKENHDVDWGSALERFQYLNSHR
3TDW Chain:A ((4-298))-NKLHYTTMIMTQFPDISIQSVESLGEGFRNYAILVNGDWVFRFPKSQQGADELNKEIQLLPLLVGC-VKVNIPQYVYIGKRSDGNPFVGYRKVQGQILGEDGMAVLPDDAKDRLALQLAEFMNELSAFPVETAISAGVP----VTNLKNKILLLSEAVEDQVFPLLDESLRDYLTLRFQSYMTHPVYTRYTPRLIHGDLSPDHFLTNLNSRQTPLTGIIDFGDAAISDPDYDYVYLLEDCGELF-TRQVMAYRGEVDLDTHIRKV-SLFVTFDQVSYLLEGLRARDQDWISEGLELLEEDKA--


General information:
TITO was launched using:
RESULT:

Template: 3TDW.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1266 -36871 -29.12 -130.29
target 2D structure prediction score : 0.69
Monomeric hydrophicity matching model chain A : 0.73

3D Compatibility (PKB) : -29.12
2D Compatibility (Sec. Struct. Predict.) : 0.69
1D Compatibility (Hydrophobicity) : 0.73
QMean score : 0.516

(partial model without unconserved sides chains):
PDB file : Tito_3TDW.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3tdw-query.scw
PDB file : Tito_Scwrl_3TDW.pdb: