Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMAKPELIELATSCFGL-------TVDEQLPIGESFASEVLRFRSG---------RQCYVLKRPFSL---EKAEREYFWLKRLSH-CPFVPDALEITKANDHGLILMTSLEGMPLKSFHQLSHRDLSKLGHDLRALHTVSADSFDGHKSWRELLLSNTDRYIDKIIGPA--------RKT-----AE-MAYA-RFHEGIDEI-PDSYLPTATHFDFRDGNILADESGYTGIIDFESMRGGHASMDFFKLLTHPSDM-----------------NDIELTALLAGYGSADWLESM----------AQLKHLVACYAVYHGLAGLAWCSQREQT---STEFYQRCAGFLEQGR
1NW1 Chain:A ((55-412))----RAHMLCARFLGGAWKTVPLEHLRISRIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLRVYFNPETESHLVAESVIFTLLSERHLG-PKLYGIF----SGGRLEEYIPSRPLSCHEISLAHMSTKIAKRVAKVHQLEVPIWKEPDY----LCEALQRWLKQLTGTVDAEHRFDLPEECGVSSVNCLDLARELEFLRAHISLSKSPVTFCHNDLQEGNILLPK--RLVLIDFEYASYNYRAFDFANHFIEWTIDYDIDEAPFYKIQTENFPENDQMLEFFLNYLRE---QGNTRENELYKKSEDLVQETLPFVPVSHFFWGVWGLLQVELSPVGFGFADYGRDRL----


General information:
TITO was launched using:
RESULT:

Template: 1NW1.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1080 -35196 -32.59 -134.33
target 2D structure prediction score : 0.64
Monomeric hydrophicity matching model chain A : 0.65

3D Compatibility (PKB) : -32.59
2D Compatibility (Sec. Struct. Predict.) : 0.64
1D Compatibility (Hydrophobicity) : 0.65
QMean score : 0.285

(partial model without unconserved sides chains):
PDB file : Tito_1NW1.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1nw1-query.scw
PDB file : Tito_Scwrl_1NW1.pdb: