Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMSTTPDLPKERVITQEEFDNAVKL-GGKFAPVFKVDEKTVVKTSD-----MTQLGEAAAMKMVREKTTIPVPEDQNVYTDP-TTGDVPIVMDFIEGDCLLDVW-DTYDNDQKQQIIEQLHSYFAQLRELKGSFIGSVDGKFCFDQVFDQDIGGHGPYE-DEASFNEGLVKALKNTMISGWGDTVCDMVL-AM-KDHEIVFTHGDISPRNILVKD--CNIVSVLDWEYSGYYPEYWEYAKAFFRP-AWEKSWIKDRAVNKILKPYPLENAICQHVFSFGAW
3N4U Chain:A ((21-255))----------------TINTIEISGEGNDCIAYEINRDFIFKFPKHSRGSTNLFNEVNILKRIHNKLPLPIPEVVFTGMPSETYQMSFAGFTKIKGVPLTPLLLNNLPKQSQNQAAKDLARFLSELHSINISGFKSNLVLDFR-----------EKINEDNKKIKKLLSRELKGPQMKKVDDFYRDILENEIYFKYYPCLIHNDFSSDHILFDTEKNTICGIIDFGDAAISDPDNDFISLMEDDEEYG-----MEFVSKILNHYKHK-------------


General information:
TITO was launched using:
RESULT:

Template: 3N4U.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 893 32070 35.91 145.11
target 2D structure prediction score : 0.64
Monomeric hydrophicity matching model chain A : 0.68

3D Compatibility (PKB) : 35.91
2D Compatibility (Sec. Struct. Predict.) : 0.64
1D Compatibility (Hydrophobicity) : 0.68
QMean score : 0.288

(partial model without unconserved sides chains):
PDB file : Tito_3N4U.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3n4u-query.scw
PDB file : Tito_Scwrl_3N4U.pdb: