Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMNLEKWIEEKFNTTKYTLEKTDKGISNHNYILTINDTKYMIRVPKKNHESLGLQHEHEKKILTL--VSDLDVPTVLFDEKEGIKVTHYIEDV-KTFNECKDKDKFARCANLMKSLHTKKAPL-FIFNPFGKIEFYKSQIKECI-----VSFPNEENFLEALKKE-YKPNTLCHNDFVQGNILYSD-TKDYLIDYEYAAKNDYRFDIASFFSENNIHYIDQRDQFYQTYFDG-EIDPMIDVQVQAFERMEDILWGYWANMLYEQRGEQIYFDIAKDKEKHYRG
4R78 Chain:A ((38-297))-------------EVLSVEQL-GGMTNQNYLAKTTNKQYIVKFFGKGTEKL-INRQDEKYNLELLKDLGLDVKNYLFDIEAGIKVNEYIESAITLDST-SIKTKFDKIAPILQTIHTSAKELRGEFAPFEEIKKYESLIEEQIPYANYESVRNAVFSLEKRLADLGVDRKSCHIDLVPENFIESPQGRLYLIDWEYSSMNDPMWDLAALFLESEFTSQEE-ETFLSHYESDQTP--VSHEKIAIYKILQDTIWSLWTVYKEEQ--GEDFGDYGVNRYQRAV-


General information:
TITO was launched using:
RESULT:

Template: 4R78.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1128 25429 22.54 102.54
target 2D structure prediction score : 0.63
Monomeric hydrophicity matching model chain A : 0.71

3D Compatibility (PKB) : 22.54
2D Compatibility (Sec. Struct. Predict.) : 0.63
1D Compatibility (Hydrophobicity) : 0.71
QMean score : 0.344

(partial model without unconserved sides chains):
PDB file : Tito_4R78.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4r78-query.scw
PDB file : Tito_Scwrl_4R78.pdb: