Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software) Input alignment information: Query sequence MSTTPDLPKERVITQEEFDNAVKL-GGKFAPVFKVDEK----TVVKTSD----MTQLGEAAAMKMVREKTTIPVPEDQNVYTDPTTGDVPIVMDFIEGDCLLDVWDTYDNDQKQQIIEQLHSYFAQLRELKGSFIGSVDGKFCFDQVFDQDIGGHGPYEDEASFNEGLVKALKNTMISGWGDTVCDMVL-AMKDHEIVFTHGDISPRNILVKDCNIVSVLDWEYSGYYPEYWEYAKAFFRP--AWEKSWIKDRAVNKILKPYPLENAICQHVFSFGAW 1ND4 Chain:A ((25-247)) --------------------AQQTIGCSDAAVFRLSAQGRPVLFVKTDLSGALNELQDEAARLSWLAT-TGVPCAAVLDVVTE--AGRDWLLLGEVPGQDLLSSH--L---APAEKVSIMADAMRRLHTLDPATCPFDHQAKHRIERARTR-MEAGLV-DQDDLDEEHQ-------GLAPAELFARLKARMPDGEDLVVTHGDACLPNIMVENGRFSGFIDCGRLGVADRYQDIALATRDIAEELG-----GEWADRFLVLYGIA-------------

General information: TITO was launched using: RESULT: Template: 1ND4.pdb Alignment : align.pir Tito was launched with SMD and SCWRL Tito text output Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 913 23912 26.19 113.32 target 2D structure prediction score : 0.67 Monomeric hydrophicity matching model chain A : 0.67 3D Compatibility (PKB) : 26.19 2D Compatibility (Sec. Struct. Predict.) : 0.67 1D Compatibility (Hydrophobicity) : 0.67 QMean score : 0.274

(partial model without unconserved sides chains): PDB file : Tito_1ND4.pdb: (Unconserved sides chains are recalculated) : Sequence: align-1nd4-query.scw PDB file : Tito_Scwrl_1ND4.pdb: