Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMNRLHAFIDLDRGAVADLTADYSL-GELRSVEPLVTGIINTNYVLRTDAGDFLLRLY---PPERSADALRFEFSTLARLAEANFPCPRVIANREGKTVAWSEAHARHYAVLEFIPGTTLPREAIDAGVVDQIGSLFADMQRTLSGFVPEG---------DKPRADLEFVRELGQATLDRIAALPGEGPATAERLRQVWARSHARFDQPKGSVPALERGVVHADLYFDNVIVEGD--QIRGVIDFDDSYFGLFLIDLAVTLME-FTFVEADALDFE---LGERLLRRYYAR-------RPEAKGEAHLLHDGMICACYKYLGYTADLPE----YAGEALLGNEYIARIDYLARPEIRAKVEAMIAAAVEVPA--
4OCV Chain:A ((24-378))----------TNEALFDVASHFALEGTVDSIEPYGDGHINTTYLVTTDGPRYILQRMNTGIFPDTVNLMRNVELVTSTLKAQGKETLDIVRTTSGDT--WAEIDGGAWRVYKFIEHTMSYNLVPNPDVFREAGRAFGDFQNFLSGFDANQLTETIAHFHDTPHRFEDFKKALAADELGRAAGCGPEIEFYLSHADQYAVVMDGLRD---GSIP---LRVTHNDTKLNNILMDATTGKARAIIDLDTIMPGSMLFDFGDSIRFGASTALEDERDLDKVHFSTELFRAYTEGFVGELRDSITAREAELLPFSGNLLTMECGMRFLADYLEGDVYFATKYPEHNLVRSRTQIKLVREMEQRADETRAIVADVMETT


General information:
TITO was launched using:
RESULT:

Template: 4OCV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1580 1304 0.83 4.04
target 2D structure prediction score : 0.55
Monomeric hydrophicity matching model chain A : 0.70

3D Compatibility (PKB) : 0.83
2D Compatibility (Sec. Struct. Predict.) : 0.55
1D Compatibility (Hydrophobicity) : 0.70
QMean score : 0.406

(partial model without unconserved sides chains):
PDB file : Tito_4OCV.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4ocv-query.scw
PDB file : Tito_Scwrl_4OCV.pdb: