Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMPINHEPLFDVLSQYDIKVVSIRNESYKDKKGVWWIQTPDEYKIL-KKISNSEDTFKYILSAAEHLRKNGVNIPAVYKTKDGKDYVNINGTCYVLYEAVEGKNPSYNSP-EDFRAIVRELAGFHAASVGFSPPDNTKPKIHLGKWVEQYTEQVEDMNRFYQTELEKS-ENDRIGKVIIEEFPAFYERAKQAIEGLKGKEYQDWVEKVKSRG-GLCHQDFAAGNLLKNPS----GKIFVLDTDSITIDIPARDIRKLLNKIMKKNGKWDL-EILRKF-IRIYQSENPLSFSEWTVVKFDLMFP-H-LFLGAMNKFYYKRDKEWSFEKYLKRINEMTAL--EKTITPVLENFDSIVYEEINQRKD----
3CSV Chain:A ((4-333))--SREDEIRDFLATHGY------ADWNRTPRYQRLRSPTGAKAVLMDWSPEEGGDTQPFVDLAQYLRNLDISAPEIYAEEHARGLLLIEDLGDALFTEVINNDPAQ--EMPLYRAAVDLLIHLHDAQTPELAR--------------------------LDPETLSEMTR----LAFSEYRYAILGDAAEDNRKRFEHRFAQILSAQLEGDMVFVHRDFHAQNLLWLPEREGLARVGVIDFQDAKLGHRAYDLVSLL-----QDARRDVPAQVEAQMIDHYIQATGVDESHFRSAYAVIAVQRNMRILGIFARLSQRFGKRHYIEFVPRVWAHFERGLAHPALASAAEEILNALPAPAPEVLERLRA


General information:
TITO was launched using:
RESULT:

Template: 3CSV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1427 46534 32.61 153.07
target 2D structure prediction score : 0.63
Monomeric hydrophicity matching model chain A : 0.64

3D Compatibility (PKB) : 32.61
2D Compatibility (Sec. Struct. Predict.) : 0.63
1D Compatibility (Hydrophobicity) : 0.64
QMean score : 0.277

(partial model without unconserved sides chains):
PDB file : Tito_3CSV.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3csv-query.scw
PDB file : Tito_Scwrl_3CSV.pdb: