Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMDESGGEARAYMLGSGIVVKTQRPHRLRPRTSLEKEAHVLSLLAGPLAGRIPRLFGYGREDTAAGPVEFLVMSRIRGCAALHAG-----LPAREALLASLADVLRSVHAADVTGLRDSGLLPADVDSAALRGRLQLGFADACDGFAAHRDRYAGAGAPERIAIAAVDALAG---LTDESPVLLHSNPGPTHVFVGD---GGLCTGLIDFGDAYASHPALDLRSWPD--PADRIVLHEAYTGGRPTT--RGFDAVWTVVMILADLNAMLHRADLAEAAGRDLALRLAQL
3TDW Chain:A ((29-281))---EGFRNYAILVNGDWVFRFPKSQQ--GADELNKEIQLLPLLVGCVKVNIPQYVYIGKRS---DGNPFVGYRKVQGQILGEDGMAVLPDDAKDRLALQLAEFMNELSAFPVETAISAGV-PV--------TNLKNKILLLSEAVEDQVFPL-LDESLRDYLTLRFQSYMTHPVYTRYTPRLIHGDLSPDHFLTNLNSRQTPLTGIIDFGDAAISDPDYDYVYLLEDCGELFTRQVMAYRGEVDLDTHIRKVSLFVTFDQVSYLLEGLRAR-----------------


General information:
TITO was launched using:
RESULT:

Template: 3TDW.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1038 -11433 -11.01 -48.04
target 2D structure prediction score : 0.54
Monomeric hydrophicity matching model chain A : 0.69

3D Compatibility (PKB) : -11.01
2D Compatibility (Sec. Struct. Predict.) : 0.54
1D Compatibility (Hydrophobicity) : 0.69
QMean score : 0.337

(partial model without unconserved sides chains):
PDB file : Tito_3TDW.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3tdw-query.scw
PDB file : Tito_Scwrl_3TDW.pdb: