Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMPTLFEGETPVDLDTVGSFVAQQCPQWGHLPLRAMTTSGTEHTTYRLGDELLVRVPRDASSEAGLRKEIDWLPRLRDGVDLEMPVIEHVGAPSLDYPHTWTINRWVSGEDASARV---LAGDVPSSWADVLAELVASLRAVDLREFAPHELPQG-QRGGHVRCRVEALHGQTDPMSGPLDPTPVMGLMEAALDA-GAPAPEPVLLHGDLIPGNLVVRN----GRLSGLLDFGTLTTGYAAWDLTPAWWVLDRSGRERFRELLE---VDDVSWAWGRAFAASQGLLADWVYAPR-GHALAPLGARAVAEALAD
3TDW Chain:A ((4-298))-----------NKLHYTTMIMTQFPDISIQSVESLG-EGFRNYAILVNGDWVFRFPKSQQGADELNKEIQLLPLLVGCVKVNIPQYVYIGKR--SDGNPFVGYRKVQGQILGEDGMAVLPDDAKDRLALQLAEFMNELSAFPVET-AISAGVPVTNLKNKILLLSEAVEDQVFPLLDESLRDYLTLRFQSYMTHPVYTRYTPRLIHGDLSPDHFLTNLNSRQTPLTGIIDFGDAAISDPDYDYVYLLEDCGELF-TRQVMAYRGEVDLDTHIRKVSLFVTFDQVSYLLEGLRARDQDWISEGLELLEEDKA-


General information:
TITO was launched using:
RESULT:

Template: 3TDW.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1259 -50759 -40.32 -179.99
target 2D structure prediction score : 0.62
Monomeric hydrophicity matching model chain A : 0.67

3D Compatibility (PKB) : -40.32
2D Compatibility (Sec. Struct. Predict.) : 0.62
1D Compatibility (Hydrophobicity) : 0.67
QMean score : 0.437

(partial model without unconserved sides chains):
PDB file : Tito_3TDW.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3tdw-query.scw
PDB file : Tito_Scwrl_3TDW.pdb: