Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMNQAQFEKVIEVLFPDIIIQEVTAYEKGWDNDIFIVNKEIVFRFPRSEEVASKVKDEIILLKHLAHKEPKLDIPRYK--GIEMDGNLKCVKYNFMKGKSLSEIKNSRLDLHSAELLGDFLSRLHSIELSALK-ETNITSFHTDTYWEN----LYESAKTYVFPNITHSERAEIQQFYEDFSNNPIYSNVNKAVIHGDLTAANIL--YNKEEECVSGIIDFTDAQIADPAFDFAGLYWAYGPEFTKKLLTYYDGKDKTGIFERVQSFYGLQPIFHELIYAVK--ENHDVDWGSALERFQYLNSHR
3TDW Chain:A ((4-287))-NKLHYTTMIMTQFPDISIQSVESLGEGFRNYAILVNGDWVFRFPKSQQGADELNKEIQLLPLLVGCV-KVNIPQYVYIGKRSDGN-PFVGYRKVQGQILGEDGMAVLPDDAKDRLALQLAEFMN-ELSAFPVETAISAGVPVTNLKNKILLLSEAVEDQVFPLLDESLRDYLTLRFQSYMTHPVYTRYTPRLIHGDLSPDHFLTNLNSRQTPLTGIIDFGDAAISDPDYDYVYLLEDCGELFTRQVMAYRGEVDLDTHIRKVSLFV----TFDQVSYLLEGLRARDQDWIS------------


General information:
TITO was launched using:
RESULT:

Template: 3TDW.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1236 -3902 -3.16 -14.29
target 2D structure prediction score : 0.71
Monomeric hydrophicity matching model chain A : 0.73

3D Compatibility (PKB) : -3.16
2D Compatibility (Sec. Struct. Predict.) : 0.71
1D Compatibility (Hydrophobicity) : 0.73
QMean score : 0.483

(partial model without unconserved sides chains):
PDB file : Tito_3TDW.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3tdw-query.scw
PDB file : Tito_Scwrl_3TDW.pdb: