Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMHGRSRLYRYLKSGRLSAKAGFDRYPDLRVKQLGGSHNVYLVS-DHRSHKKCIVKSFAGSGPKSVQHMEKEYKRLRQAGRLVDDRRWVHVARPLCKSNGEGFFAEELVSGKALGDYMRDAMANGRDS-ELYEKLTMLAGFLALLHKKTERPSHVKPSNIRD-ELKKHARQASKG-GAFAPHELKRIESLVDNVTSNDLISQTRR-GLVHGDANPSNFLY-----DKKRLNVIDMERSGYRDPVYDLGMLA--------GELCHY-AMKYGGNEYKADPFIGHLYWTYAGNFK-DQLGTFIRLTGRNP--------IYMANSLLRIARHPFFSP---EYKRRLARKAYECLKSLKK
3CSV Chain:A ((4-333))-SREDEIRDFLATHGYADWNRTPRY-----QRLRSPTGAKAVLMDWSPEEG-----------GDTQPFVDLAQYLRNLD--------ISAPEIYAEEHARGLLLIEDLGDALFTEVINN---DPAQEMPLYRA--AVDLLIHLHDAQTPELARLDPETLSEMTRLAFSEYRYAILGDAAEDNRKRFEHRFAQILSAQ---LEGDMVFVHRDFHAQNLLWLPEREGLARVGVIDFQDAKLGHRAYDLVSLLQDARRDVPAQVEAQMIDHYIQATGVDESHFRSAYAVIAVQRNMRILGIFARLSQRFGKRHYIEFVPRVWAHFERGLAHPALASAAEEILNALPAPAPEVLERLRA


General information:
TITO was launched using:
RESULT:

Template: 3CSV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1345 19422 14.44 66.74
target 2D structure prediction score : 0.60
Monomeric hydrophicity matching model chain A : 0.67

3D Compatibility (PKB) : 14.44
2D Compatibility (Sec. Struct. Predict.) : 0.60
1D Compatibility (Hydrophobicity) : 0.67
QMean score : 0.289

(partial model without unconserved sides chains):
PDB file : Tito_3CSV.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3csv-query.scw
PDB file : Tito_Scwrl_3CSV.pdb: