Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMTPDRPEAEIEAMSALFARHLPGLAARSVTRLGEGMDHVAYEADGGLILRMSKEPDPARRADRIRREAALLALVAEISPLPVPRVILSDP---DAGVLGYVKLPGRPLAERP-----VAEPGRLAPALGEFLTRLHLAPPERFSALAAPDTQPLTAWLAEAERHHRAVAAHLPAAARRRIE----AFLGGAPPAEPRALAFCHNDLGAEHVLAEG----GTVTGVIDWSDAEIADPAYDLGLLYRDLGPEVTASILAHYAAPW-DDAAGRRAVFYARCALLEDLAYGLRTGPRRYAEAALAHLDRTFSAWG
3TDW Chain:A ((4-299))--------NKLHYTTMIMTQFPDISIQSVESLGEGFRNYAILVNGDWVFRFPKSQQGA---DELNKEIQLLPLLVGCVKVNIPQYVYIGKRSDGNPFVGYRKVQGQILGEDGMAVLPDDAKDRLALQLAEFMNELSAFPVETAISAGVPVTNLKNKILLLSEAVEDQVFPLLDESLRDYLTLRFQSYMT-HPVYTRYTPRLIHGDLSPDHFLTNLNSRQTPLTGIIDFGDAAISDPDYDYVYLLEDCGEL-FTRQVMAYRGEVDLDTHIRKVSLFVTFDQVSYLLEGLRARDQDWISEGLELLEEDKAN--


General information:
TITO was launched using:
RESULT:

Template: 3TDW.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1250 -59674 -47.74 -213.89
target 2D structure prediction score : 0.70
Monomeric hydrophicity matching model chain A : 0.74

3D Compatibility (PKB) : -47.74
2D Compatibility (Sec. Struct. Predict.) : 0.70
1D Compatibility (Hydrophobicity) : 0.74
QMean score : 0.558

(partial model without unconserved sides chains):
PDB file : Tito_3TDW.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3tdw-query.scw
PDB file : Tito_Scwrl_3TDW.pdb: