Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMMDSQIQSLPEAIRKYIEGREY-TIDDMGKSGSKVLIFE----DMVLKITDK-----PCDDKDAVEMMRWLEGKIPAPQVIVFEEDDSYSYLLMTKVRGKVACDKYYLE-RPKELVPLLSKSIKMLQSIDITDCPVVKNVDRELKKAAYRVKNGLVDISDAEPDTFGENGRFRDPEELLSWLQENRPPY-EPVLSHGDLCLPNILIEKGNISGFIDMGNCGIADKWEDIAILYRSLRHNFD-GTYGKIYPGLEPDSFFEELGIEPDREKIDYYILLDELF
3TM0 Chain:A ((6-263))---------SPELKKLIEKYRCVKDTE-GMSPAKVYKLVGENENLYLKMTDSRYKGTTYDVEREKDMMLWLEGKLPVPKVLHFERHDGWSNLLMSEADGVLCSEEYEDEQSPEKIIELYAECIRLFHSIDISDCPYTNSLDSRLAELDYLLNNDLADVDCEN-W--EEDTPFKDPRELYDFLKTEK-PEEELVFSHGDLGDSNIFVKDGKVSGFIDLGRSGRADKWYDIAFCVRSIREDIGEEQY--------VELFFDLLGIKPDWEKIKYYILLDELF


General information:
TITO was launched using:
RESULT:

Template: 3TM0.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1095 16791 15.33 68.53
target 2D structure prediction score : 0.73
Monomeric hydrophicity matching model chain A : 0.80

3D Compatibility (PKB) : 15.33
2D Compatibility (Sec. Struct. Predict.) : 0.73
1D Compatibility (Hydrophobicity) : 0.80
QMean score : 0.623

(partial model without unconserved sides chains):
PDB file : Tito_3TM0.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3tm0-query.scw
PDB file : Tito_Scwrl_3TM0.pdb: