Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMAAEPVQRRIQFVFDQYQVFPNDNLTLCYFGMANEVYIVPTEKGRYVLKKCFKSNTKALISNEVALIEQLNSYGCKTPEIVPDKEGNAYVDFDGEIYLLTKYCQDMTYNWSSEIPDKA-HCETIRAMAHFHCATDTFVPPFSDTRTTFLGLAGHSEKLAELRHHDSDTERGSFQQMSLFLPQLESQLNRLKAEVTQADLSQAKQCFIHGDLHCYNLFFDQDGRYTHVIDFDFSRLDYRLADIFWTSRIIAFKLLRRRYSREQLEAWDHVLPEPQMLEILTHVWQMIIDQYRQVAALDDRELALVPLFAHAVPLYICHFFEYSNSEQECIEHLKWFEWELSQVERSARLNRLAIEKVLKDVA
2PPQ Chain:A ((7-280))----ITEDELRNFLTQYDVGSLTSYKGIAE---NSNFLLHTTKDPLILTLYEK---KNDLPFFLGLMQHLAAKGLSCPLPLPRKDGELLGELSGRPAALISFLEGMWLR----KPEAKHCREVGKALAAMHLASEGFEIKRPNA-LSV-------DGWKVLW----DKSEERADEV---EKGLREEIRPEIDYLAAHWPKDLPAGVIHADLFQDNVFFLGD-ELSGLIDFYFACNDLLAYDVSICLNAWCFEK---------------------DGAYNVTKGKALLEGYQSVRPLSEAELEALPLLSRGSALRFFLTR------------------------------------------


General information:
TITO was launched using:
RESULT:

Template: 2PPQ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1250 -107691 -86.15 -403.34
target 2D structure prediction score : 0.54
Monomeric hydrophicity matching model chain A : 0.67

3D Compatibility (PKB) : -86.15
2D Compatibility (Sec. Struct. Predict.) : 0.54
1D Compatibility (Hydrophobicity) : 0.67
QMean score : 0.323

(partial model without unconserved sides chains):
PDB file : Tito_2PPQ.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-2ppq-query.scw
PDB file : Tito_Scwrl_2PPQ.pdb: