Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMENHEIRDRVESVYG--HSVSGIRDVSSNQ-KQTYVLDTSDGEVVYQRCESPQF---RESFRCEVLLLEQMRDVRTPVPKVLWRELENTPEAVISSAPGREVSEFYGEQNFEQA--GDVVKQAGTTLSQIHEK--KFNHSGKLSTQGGLELKATSWEDILAEIFGDYIHQLQGSRFEDSITDAVALFDNGLDLVDEHGSC---LVHYDVAPDNVFWE--NGNISSVIDFGRAMSGDPAFDLAYAQVQFV-LAFYDGREAEQLN------RLLFGSYHTE---SLRGEWHKRMWFYRKLFIVEA-MKSFESWTEGQGMSEEEKQESAEWNRDQLSQAAAELR-----------------
4OCV Chain:A ((24-378))--TNEALFDVASHFALEGTVDSIEPYGDGHINTTYLVTTDGPRYILQRMNTGIFPDTVNLMRNVELVTSTLKAQGKETLDIV-RTTSGDTWAEIDGGAWRVYKFIEHTMSYNLVPNPDVFREAGRAFGDFQNFLSGFDANQLTETIAHFHDTPHRFEDFKKALAADELGRAAGCGPEIEFYLSHADQYAVVMDGLRDGSIPLRVTHNDTKLNNILMDATTGKARAIIDLDTIMPGSMLFDFGDSIRFGASTALEDERDLDKVHFSTELFRAYTEGFVGELRDSITAREAELLPFSGNLLTMECGMRFLADYLEGDVYFATKYPEHNLVRSRTQIKLVREMEQRADETRAIVADVMETT


General information:
TITO was launched using:
RESULT:

Template: 4OCV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1494 68185 45.64 218.54
target 2D structure prediction score : 0.56
Monomeric hydrophicity matching model chain A : 0.67

3D Compatibility (PKB) : 45.64
2D Compatibility (Sec. Struct. Predict.) : 0.56
1D Compatibility (Hydrophobicity) : 0.67
QMean score : 0.391

(partial model without unconserved sides chains):
PDB file : Tito_4OCV.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4ocv-query.scw
PDB file : Tito_Scwrl_4OCV.pdb: