Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMLAGVLSILPWLADTLLSPADAYPESSSSSSSRSRSTSPSRSRTSSPPPNTDADLADERLSLRTDQLLPVEGANSPCALPQPRCVRREGKVLHGASGDFVWKVEYE-GSSMIVKGGPGITKAEAEMTIFVRTRTSIPVPKVYGVVHEDDSTYIYFEFVAGVSLTSAVQR---LSEPALSSVYKQLRQMLDELHAVLAPPGTVIGSLDGSNTFAFTIRQGNDSPRAFGDLTSSAALADYFKEEYLALPDTSQEAWAAIEAHLGRSSPLVLVHGDLWPSNI-LVSVDNLDNPFVAAIIDWENGGFYPEWVEFPPVARRALGGRCDATDRVLQVVAGSDNVEGFNKEDYRWATHVYGAF------------------
4DN5 Chain:A ((8-351))------SVEEYLVHALQGSVSSGQAHSLTSLAKTWAARGSRSREPSPKTEDNEGVL------LTEKLKPVDYEYRE----EVHWATHQLRLGRGSFGEVHRMEDKQTGFQCAVKKVRLEVFRAEELMACAGLTSP-RIVPLYGAVREGPWVNIFMELLEGGSLGQLVKEQGCLPEDRALYYLGQALEGLEYLHS----RRILHGDVKADNVLLSS--DG-----------SHAALCDFGHAVCLQIP--GTETHMAPEVVLGRSCDA---KVDVWSSCCMMLHMLNGCHPWT----QFFRGPLCLKIASEPPPVREIPPSCAPLTAQAIQEGLRKEPIHRVSAAELGGKVNRALQQVGGLKSPWRGEYKEPRHP


General information:
TITO was launched using:
RESULT:

Template: 4DN5.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1701 9529 5.60 30.94
target 2D structure prediction score : 0.55
Monomeric hydrophicity matching model chain A : 0.67

3D Compatibility (PKB) : 5.60
2D Compatibility (Sec. Struct. Predict.) : 0.55
1D Compatibility (Hydrophobicity) : 0.67
QMean score : 0.207

(partial model without unconserved sides chains):
PDB file : Tito_4DN5.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4dn5-query.scw
PDB file : Tito_Scwrl_4DN5.pdb: