Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMNLPDAWRRTFADAVIEQQTIGESRADVWRISPADSAALFVKCEQVMTWGELPGEVQRLRWLETLDLPAPRVLETTTEAEHNWLLMTAVPGRDLASSEQLSPLQIVTLTAQALRELHAVAIDSCPFDHCLDKKIPLAREHVRAGLIDEEDFDDARLGRSAEDVFQQLLAERPPHEELVVTHGDACLPNLLAEHGRFSGFVDCGRLGVADRYQDLALAAHSITDNLGEQWLPAFFEAYGV-QPDQRRIAFYQLLDEFF
1ND4 Chain:A ((10-264))-GSPAAWVERLFGYDWAQQTIGCSDAAVFRLSAQGRPVLFVKTDLSGALNELQDEAARLSWLATTGVPCAAVLDVVTEAGRDWLLLGEVPGQDLLS-SHLAPAEKVSIMADAMRRLHTLDPATCPFDHQAKHRIERARTRMEAGLVDQDDLDEEHQGLAPAELFARLKARMPDGEDLVVTHGDACLPNIMVENGRFSGFIDCGRLGVADRYQDIALATRDIAEELGGEWADRFLVLYGIAAPDSQRIAFYRLLDEFF


General information:
TITO was launched using:
RESULT:

Template: 1ND4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1260 -140629 -111.61 -553.66
target 2D structure prediction score : 0.64
Monomeric hydrophicity matching model chain A : 0.85

3D Compatibility (PKB) : -111.61
2D Compatibility (Sec. Struct. Predict.) : 0.64
1D Compatibility (Hydrophobicity) : 0.85
QMean score : 0.540

(partial model without unconserved sides chains):
PDB file : Tito_1ND4.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1nd4-query.scw
PDB file : Tito_Scwrl_1ND4.pdb: