Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequence----MIDITSDLKELNISYDKINVVRQGENSDTFLITTSKKKLIAKKFKNLNFKTITNTYLNKKILNQLVDKKLFPKV-VYQSEEKD---------FLIYEYVESIKSNK---DKLFYKNLGMKIREIHEI--KPCKNNLTF--------EQQLNFYKMSLGK----------------VNKEKVYTRIEDLLNDINIKKSKLVFSHNDLNANNILFN----KDICIID------------------YEYSSLNNKFCDLSKVIFEFQMTEEEIESLLKGYRINFDDVTKKKI-------ILWQRFNLYLDYI------------WSIIISSNENQLTKENIESFYLNKYIDFDLKN--
4OCV Chain:A ((24-378))TNEALFDVASHFA-LEGTVDSIEPYGDGHINTTYLVTTDGPRYILQRMNTGIFPDTVNLMRNVELVTSTLKAQGKETLDIVRTTSGDTWAEIDGGAWRVYKFIEHTMSYNLVPNPDVFREAGRAFGDFQNFLSGFDANQLTETIAHFHDTPHRFEDFKKALAADELGRAAGCGPEIEFYLSHADQYAVVMDGLRDGSIP---LRVTHNDTKLNNILMDATTGKARAIIDLDTIMPGSMLFDFGDSIRFGASTALEDERDLDKVHFSTELFRAYTEGFVGELRDSITAREAELLPFSGNLLTMECGMRFLADYLEGDVYFATKYPEHNLVRSRTQIKLVREMEQRADETRAIVADVMETT


General information:
TITO was launched using:
RESULT:

Template: 4OCV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1133 56885 50.21 211.47
target 2D structure prediction score : 0.57
Monomeric hydrophicity matching model chain A : 0.67

3D Compatibility (PKB) : 50.21
2D Compatibility (Sec. Struct. Predict.) : 0.57
1D Compatibility (Hydrophobicity) : 0.67
QMean score : 0.326

(partial model without unconserved sides chains):
PDB file : Tito_4OCV.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4ocv-query.scw
PDB file : Tito_Scwrl_4OCV.pdb: