Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMIIEINGKWIFRFPRNPISKENTKERLDFLISFSKVSSLKIPVPKYVE-----NNFIGYEKIQGSHPRPTNIKNLAELDKLKIAKQLGLFLKDLHNFKSKKINFDTGYLIMRKGDYKTCPKEIT----KYLNADEIKNLETKLKAIANNPLNFKKPTSIIHGDFYFNNIIWNPD--KKVITGVIDWANLGLGTPAMDFIMLADFNKNTNDKFLKDILKYYGAKG-DD-LFFQIKENAIIDAMNWFWSYYKEKNPKGVARMIKKLKKLLAE
3TDW Chain:A ((35-298))-AILVNGDWVFRFPKSQQGADELNKEIQLLPLLVGCVKVNIPQYVYIGKRSDGNPFVGYRKVQGQILGEDGMAVLPDDAKDRLALQLAEFMNELSAFPVETAISAGVPVTNLKNKILLLSEAVEDQVFPLLDESLRDYLTLRFQSYMTHPVYTRYTPRLIHGDLSPDHFLTNLNSRQTPLTGIIDFGDAAISDPDYDYVYLLED---CGEL-FTRQVMAYRGEVDLDTHIRKVSLFVTFDQVSYLLEGLRARDQDWISEGLELLEEDKA-


General information:
TITO was launched using:
RESULT:

Template: 3TDW.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1065 5760 5.41 22.95
target 2D structure prediction score : 0.61
Monomeric hydrophicity matching model chain A : 0.73

3D Compatibility (PKB) : 5.41
2D Compatibility (Sec. Struct. Predict.) : 0.61
1D Compatibility (Hydrophobicity) : 0.73
QMean score : 0.522

(partial model without unconserved sides chains):
PDB file : Tito_3TDW.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3tdw-query.scw
PDB file : Tito_Scwrl_3TDW.pdb: