Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMAVYTVLDSGAFARIAGAFGLGEVQTVDAIPEGSINTNHRVLTSSGRFFVRHTTVRSAEVLRFEAALLAHLAESHFPGPTPVLTVQGEPFLELQGGRVTVFRWLAGEELQRSQLTPVHLERLGHELGKMHRLTQSFGGSRDNPYSAAQVQVWLKGLRSNSDAEVASVAVELEGYLARAEQERGGGLEPQGVIHADLFMDNVKWLADRVGAFFDFEMACRDAYALDVAITLNAWCFDG--DYLPELCQAFFRGYQDARPLSAVEREHLFGHALFGAVRYTASRIRDFHLSPLPAEQLTRKSFRTYLARARTLVSLGPAGFLARMGL
2PPQ Chain:A ((5-318))----TDITEDELRNFLTQYDVGSLTSYKGIAE---NSNFLLHTTKDPLILTLYEK--KNDLPFFLGLMQHLAAKGLSCPLPLPRKDGELLGELSGRPAALISFLEGMWLRK--PEAKHCREVGKALAAMHLASEGFEIKRPNALSVDGWKVLWDKSEERADEVEKGLREEIRPEIDYLAAHW-PKDLPAGVIHADLFQDNVFFLGDELSGLIDFYFACNDLLAYDVSICLNAWCFEKDGAYNVTKGKALLEGYQSVRPLSEAELEALPLLSRGSALRFFLTRLYDWLTTP-AGALVVKKDPLEYLRKLRFHRTIANVAEYG----


General information:
TITO was launched using:
RESULT:

Template: 2PPQ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1481 -139434 -94.15 -455.67
target 2D structure prediction score : 0.61
Monomeric hydrophicity matching model chain A : 0.72

3D Compatibility (PKB) : -94.15
2D Compatibility (Sec. Struct. Predict.) : 0.61
1D Compatibility (Hydrophobicity) : 0.72
QMean score : 0.485

(partial model without unconserved sides chains):
PDB file : Tito_2PPQ.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-2ppq-query.scw
PDB file : Tito_Scwrl_2PPQ.pdb: