Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMVAAPIPVAGWGDKDDPWECLGERSSGATVYRVGE-V--PSFYVKTTPPRHPDDHRFNPTKEAERLRWLAAQGLPVPEVVALDANDELAWVVTRALPGRPAARHWKP--EERWRVIDVVADVARTLHALPVAECPFERRLADLIHQASSSMALGALDLDDVDPSHEGWTAQQLWDELSKMTPPAEDDLVVCHGDFCLDNVLVDPETLTLAGILDVDRAGVSDRWMDLALALYNIGQDDVMGLRSAARRALPPAVRHH-RRPAQADLHPTAGRISLS
4GKH Chain:A ((25-268))-------------YGYRWARDNVGQSGATIYRLYGKPNAPELFLKHGKGS----VANDVTDEMVRLNWLTA-FMPLPTIKHFIRTPDDAWLLTTAIPGKTAFQVLEEYPDSGENIVDALAVFLRRLHSIPVCNCPFNSDRVFRLAQAQSRMNNGLVDASDFDDERNGWPVEQVWKEMHK-LLPFSPDSVVTHGDFSLDNLIFDEG--KLIGCIDVGRVGIADRYQDLAILWNCLGEF-----SPSLQKRLFQKYGIDNPDMNKL------QFHLML


General information:
TITO was launched using:
RESULT:

Template: 4GKH.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1045 5837 5.59 24.53
target 2D structure prediction score : 0.59
Monomeric hydrophicity matching model chain A : 0.71

3D Compatibility (PKB) : 5.59
2D Compatibility (Sec. Struct. Predict.) : 0.59
1D Compatibility (Hydrophobicity) : 0.71
QMean score : 0.390

(partial model without unconserved sides chains):
PDB file : Tito_4GKH.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4gkh-query.scw
PDB file : Tito_Scwrl_4GKH.pdb: