Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequence---------MKNIPNFNSFVKVEPIHKGWSGDKKYYVEAENGERFLLRVSDISKYKEK-ESEFEIMKKMSATGMKMSLPISFGVCENEKSVYQLLTWCDGVEA-KEALYNLSDEEQYIFGQKAAKILRQIETIDYKPASEEWVISYQERVKYYIELYRKCGYTFD--------GDEMVISYLQTGLQHIGE--RPTALMHNDFQTDNMVISPDGELYIIDFQMCGIADPYHVLTGV-GVSAMYSIPFAKGQIEEYFGRNVPEDFWEKYNHYMLAEMLYSFTVGVNMEEERENTLHMFDDEVERIKNNGSHIPKWYQKKI
3HAM Chain:A ((1-299))MVNLDAEIYEHLNKQIKIN-ELRYLSSGDD-SDTFLC----NEQYVVKVPKRDSVRISQKREFELYRFLENCKLSYQIPAVVY----QSDRFNIMKYIKGERITYEQYHKLSEKEKDALAYDEATFLKELHSIEIDCSVSLFSDALVNKKDKFLQDKKLLISILEKEQLLTDEMLEHIETIYENILNNAVLFKYTPCLVHNDFSANNMIFRNNRLFGVIDFGDFNVGDPDNDFLCLLDCSTDDFGKEFGRKVLKYYQHKAPEVAERKAELNDVYWSIDQIIYGYE-----RKDREMLIKGVSELLQTQAEMFIF-----


General information:
TITO was launched using:
RESULT:

Template: 3HAM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1182 25909 21.92 93.53
target 2D structure prediction score : 0.61
Monomeric hydrophicity matching model chain A : 0.69

3D Compatibility (PKB) : 21.92
2D Compatibility (Sec. Struct. Predict.) : 0.61
1D Compatibility (Hydrophobicity) : 0.69
QMean score : 0.384

(partial model without unconserved sides chains):
PDB file : Tito_3HAM.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3ham-query.scw
PDB file : Tito_Scwrl_3HAM.pdb: