Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMKNKRPKCSIVKSVASRYLENIISVEPVHKGTSTFVYRLITETGIFYIRFL-----PEKASFASEV-LVHNTLYELDVKVPKVIAFEHKDKETNL---SVMIIEEIAGICLEDSDSQLDFKEILRNAGKQLALIHTISVDGFGWID-KSSHIKLKGENQRFEDYFNLYLENDL----QALCKYSFSNEEIKQIRRLMISA--GSILNVEKAVLVHGDFDISHIFH--KDGRYTGIIDFGEVRGNNRLYDLATFAGF-----------YQDRKLYSYLLKGYCE---------ITPLSARDL-YATELMALFIILRFL------GKKVNTKFSNHWFKLAKKQLNHINNLD-NVEQLLDITRH-----
4OCV Chain:A ((24-378))--TNEALFDVASHFALE--GTVDSIEPYGDGHINTTYLVTTDGPRYILQRMNTGIFPDTVNLMRNVELVTSTLKAQGKETLDIVRTTSGDTWAEIDGGAWRVYKFIEHTM---SYNLVPNPDVFREAGRAFGDFQNFL-SGFDANQLTETIAHFHDTPHRFEDFKKALAADELGRAAGCGPEIEFYLSHADQYAVVMDGLRDGSI----PLRVTHNDTKLNNILMDATTGKARAIIDLDTIMPGSMLFDFGDSIRFGASTALEDERDLDKVHFSTELFRAYTEGFVGELRDSITAREAELLPFSGNLLTMECGMRFLADYLEGDVYFATKYPEHNLVRSRTQIKLVREMEQRADETRAIVADVMETT


General information:
TITO was launched using:
RESULT:

Template: 4OCV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1436 -23753 -16.54 -78.13
target 2D structure prediction score : 0.50
Monomeric hydrophicity matching model chain A : 0.69

3D Compatibility (PKB) : -16.54
2D Compatibility (Sec. Struct. Predict.) : 0.50
1D Compatibility (Hydrophobicity) : 0.69
QMean score : 0.413

(partial model without unconserved sides chains):
PDB file : Tito_4OCV.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4ocv-query.scw
PDB file : Tito_Scwrl_4OCV.pdb: