@TOME V3
(Feb 2022)
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
3D Alignment Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
3D Alignment Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
PDB Ligands
Affinity Score
Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
Sequence Alignment
Tab of Complexes
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Pm1_004260T0_kcl81: (2019-03-29 )
LDYFEGGCKVTIYYPGIPTGIVMDNLVPPGEVITVALENGKVYAKSNKNCKFEPHNSEGNPWPSGLRIRAH
Atome Classification :
(20 SA)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.....--...----.10..---.---.-----------.-..---------.20.....---..--.-30---.-......--.---.---40..--..-.--------...------50-------.-..-.-.------.---------.-.-60-.-...---....70------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LDYFE--G
G
C
----
K
V
T
I
Y
---Y---P-----------G-I
P
---------
T
G
I
V
MDNL---VP--P-G----
E
-
V
I
T
V
A
L--E---N---
G
K
V
Y
--
A
K-S--------NKN------CK-------F-EP-H-N------S---------E-G-NP-W-PS
G
---
L
R
I
RAH------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
Fugue
72.83
21%
-14
- C4 -
0.55
2MYW
-
?
A:
[7-85]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SGRENLYF
Q
G
H
M
A
--
A
P
A
----
R
F
C
V
Y
---
Y
---
D
-----------
G
H
L
P
---------
A
T
R
V
L
L
M
Y
---
V
R
--
I
-
G
----
T
-
T
A
T
I
T
A
--
R
---
G
---
H
E
F
E
--
V
E
-
A
K-------
D
Q
N
------
C
K
-------
V
-
I
L
-
T
-
N
------------------
G
-
K
Q
-
A
-
P
D
W
---
L
A
A
E
P
Y
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
Fugue
58.58
25%
21
* C7 *
-
5DQR
3
HCAR_ARATH
A:
[16-436]
EDWREKSRPIPPGGTYPAKDHCSQCGLCDTYYIAHVKEACAFLGDGMSRIESLEPVVHGRGRKADS
L
Q
D
T
Y
FGVHQ
E
Q
L
Y
A
R
K
LKPVEGAQWTG
I
V
T
T
I
A
I
E
M
L
K
S
NMVEAVV
C
V
Q
S
D
PEDRL
S
P
R
P
V
LART
P
E
E
V
L
A
A
RGVKPTLSPNLNT
L
E
L
I
E
A
S
GVK
R
L
L
F
C
G
V
G
C
Q
V
Q
A
L
R
S
V
EQHLNLE
K
L
Y
V
L
G
T
N
C
V
DNGT
R
D
G
L
D
K
F
L
K
A
A
SKEPETVLHYEFMQDY
K
V
Q
L
K
H
LDG
H
I
E
E
V
P
YFSLPANDLVDVIA
P
S
C
Y
S
C
F
D
Y
T
N
--
A
L
A
----
D
L
V
I
G
---
Y
---
M
-----------
G
-
V
P
---------
K
Y
S
G
L
-
N
M
---
T
D
--
H
-
P
----
Q
-
Y
I
T
V
R
N
--
E
---
R
---
G
K
E
M
--
L
S
-
L
--------
V
E
N
L-----
L
E
-------
I
-
T
P
-
T
-
I
------
S
---------
S
-
G
-
D
R
-
R
-
P
F
V
---
T
E
T
V
K
A
D
D
AAQPAP
L
F
V
G
N
I
I
A
F
I
L
N
L
V
GPKG
L
E
F
A
R
Y
S
L
D
Y
H
T
I
R
N
Y
L
Y
V
N
R
KWG
K
Q
R
A
N
T
H
MP
S
Y
A
K
K
I
V
E
M
Y
N
KNG
Q
I
D
K
M
L
S
K---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
Fugue
54.83
15%
-8
- C6 -
-
4E5X
-
E3GL_ADE06
G:
[2-100]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KKVEFKEPACNVTFKSEANECTTL
I
K
C
T
T
--
E
H
E
----
K
L
I
I
R
---
H
---
K
-----------
D
-
K
I
---------
G
K
Y
A
V
Y
A
I
---
W
Q
--
P
-
G
DT--
N
-
D
Y
N
V
T
V
--
F
---
Q
---
G
E
N
R
--
K
T
-
F
--------
M
Y
K
FPFYEM
C
D
-------
I
-
T
M
-
Y
-
M
------
S
---------
K
Q
Y
-
K
L
-
W
-
P
P
Q
---
K
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
SP3
54.45
22%
84
* C8 *
-
1NPS
-
DESS_MYXXA
A:
[1-88]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A
N
I
T
V
F
Y
N
E
DF
Q
G
K
----
Q
V
D
L
----
P
---
P
G
N
Y
T
R
A
Q
L
A
A
L
G
-
I
E
---------
N
N
T
I
S
S
V
K
---
V
P
--
P
-
G
----
V
-
K
A
I
L
Y
Q
--
N
DGF
A
---
G
D
Q
I
--
E
V
-
V
--------
A
N
A
------
E
E
-------
L
-
G
P
-
L
-
N
------
N
---------
N
--------
V
S
S
---
I
R
V
I
S
V
PV----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
Fugue
54.29
15%
-69
- C4 -
0.35
2MM2
-
?
A:
[1-65]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
C
----
T
A
N
I
L
-------------------
N
-
I
N
---------
E
V
V
I
A
T
G
C
---
V
P
--
A
-
G
----
G
-
N
L
I
I
R
V
--
G
---
S
---
D
H
S
Y
--
L
I
-
R
A
-------
T
V
S
------
C
G
-------
L
-
S
L
-
N
-
P
------
S
---------
Q
-
S
-
F
I
-
N
-
G
E
S
---
L
A
S
G
G
R
C-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
Fugue
53.60
21%
52
- C6 -
-
5J4F
-
?
A:
[22-119]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EV
V
H
F
L
E
--
G
V
C
FEKL
H
I
E
V
L
---
N
---
E
NSS
H
K
E
I
R
I
--
C
-
M
P
---------
K
G
A
V
M
D
K
H
---
K
A
--
P
-
G
----
A
-
I
S
V
Q
V
L
--
E
---
G
---
K
I
V
F
--
E
V
-
G
--------
D
E
K
------
I
E
-------
M
-
P
K
-
G
-
A
------
L
---------
I
-
S
-
L
E
-
A
-
Q
V
L
---
H
R
L
D
A
L
EN
S
V
I
R
L
S
L
S
KK------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
Fugue
51.71
24%
40
- C9 -
-
5HI8
-
?
A:
[1-136]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------NS
M
I
D
K
F
C
D
W
F
E
G
E
F
D
N
W
T
Q
A
A
S
N
PTKWAH
I
I
V
K
HEKISEY
K
Y
H
T
S
S
R
YSY
M
D
K
P
Y
--
R
E
Q
----
T
V
D
I
E
---
Y
---
V
-----------
C
-
P
E
---------
L
I
I
V
H
N
---------
P
-
A
----
C
-
D
I
I
F
K
W
--
T
---
G
---
I
Y
F
E
--
G
E
-
S
--------
E
P
D
------
C
Q
-------
W
-
N
-----------------------
G
-
Q
P
-
L
-
D
S
K
---
A
R
L
Y
A
D
E
Y
H
T
W
D
V
G
YWEGSE
G
F
F
H
F
K
K
N
V-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
50.43
26%
-30
- C10 -
-
1EA0
-
GLTB_AZOBR
A:
[377-442]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
Q
V
I
E
K
G
R
---
L
G
--
P
-
G
----
E
-
M
I
A
V
D
L
--
Q
---
S
---
G
K
L
Y
---------------
R
D
------
R
E
-------
L
-
K
D
-
H
-
L
------
A
---------
T
-
L
-
K
P
-
W
-
D
K
W
---
V
Q
N
T
T
H
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
49.16
26%
-30
- C10 -
-
2VDC
-
GLTB_AZOBR
A:
[377-425]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
Q
V
I
E
K
G
R
---
L
G
--
P
-
G
----
E
-
M
I
A
V
D
L
--
Q
---
S
---
G
K
L
Y
---------------
R
D
------
R
E
-------
L
-
K
D
-
H
-
L
------
A
---------
T
-
L
-
K
P
-
W
-
D
K
W
---
V
Q
N
T
T
H
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
SP3
48.91
14%
50
- C9 -
-
1BDO
1
?
?:
[1-80]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EIS
G
H
I
V
R
--
S
P
M
----
V
G
T
F
Y
RTP
S
---
P
-----------
D
-
A
K
---------
A
F
I
E
V
G
Q
K
---
V
N
--
V
-
G
----
D
-
T
L
C
I
V
E
--
A
---
M
---
K
M
M
N
--
Q
I
E
A
--------
D
K
S
------
G
T
-------
V
-
K
A
I
L
-
V
------
E
---------
S
-
G
-
Q
P
-
V
-
E
F
D
EPL
V
V
I
E
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
35
HHSearch
48.18
36%
-39
- C8 -
-
3VHX
-
KIF23_HUMAN
D:
[37-79]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
Q
---------
T
E
T
V
M
Q
P
H
---
V
P
--
H
-
A
-------
I
T
V
S
V
--
A
---
N
---
E
K
A
L
--
A
K
-
C
--------
E
K
Y
------
M
L
-------
T
-
H
Q
-
E
L
A
------
S
---------
D
-
G
-
E
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
Fugue
47.06
20%
60
- C4 -
0.24
5A6W
4
?
C:
[11-93]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RA
I
D
L
S
R
--
E
R
D
----
P
N
F
F
D
---
H
---
P
-----------
G
-
I
P
VPE
C
F
W
F
M
F
K
N
N
V
R
Q
D
A
---
G
T
C
Y
S
-
S
----
W
-
K
M
D
M
K
V
--
G
---
P
---
N
W
V
H
--
I
K
-
S
--------
D
D
N
------
C
N
-------
L
-
S
-------------------------
G
D
-
F
-
P
P
G
---
W
I
V
L
G
K
K
R
PGF-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
56
HHSearch
46.78
14%
7
- C4 -
0.30
2ARZ
2
?
A:
[20-92]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
R
A
----
V
L
S
T
H
---
S
KKW
P
-----------
G
-
F
P
---------
F
G
S
V
V
P
Y
C
---
L
D
--
A
E
G
----
R
-
P
L
I
L
I
S
--
R
---
I
---
A
Q
H
T
H
N
L
Q
-
A
--------
D
P
R
------
C
S
-------
M
-
L
V
-
G
-
E
------
R
---------
G
-
A
E
D
I
Q
A
-
V
G
R
---
L
T
L
L
A
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
SP3
46.32
15%
97
- C6 -
-
1RUW
1
A:
[1-69]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
--
D
P
K
----
F
E
A
A
Y
D--
F
---
P
-----------
G
-
S
G
---------
S
S
S
E
L
P
-----
L
K
--
K
-
G
----
D
-
I
V
F
I
S
R
--
D
EP-
S
---
G
W
S
L
--
A
K
-
L
--------
L
D
G
------
S
K
E
G
W
V
PTA
Y
M
T
P
-
Y
-
K
------
D
---------
T
-
R
-
N
T
-
V
-
P
V
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
SP3
45.89
19%
28
- C6 -
-
1CSK
-
CSK_HUMAN
A:
[11-68]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
T
----
E
C
I
A
K
---
Y
---
N
-----------
F
-
H
G
---------
T
A
--
E
Q
D
L
P
--
F
C
--
K
-
G
----
D
-
V
L
T
I
V
A
VT
K
---
D
---
P
N
W
Y
--
K
A
-
K
--------
N
K
V
------
G
R
-------------------------------
E
-
G
----
I
I
P
A
N
Y--
V
Q
K
R
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
Fugue
45.61
22%
84
- C5 -
-
1ZQ1
-
GATE_PYRAB
C:
[5-512]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TDKFNYEELGLKVGLEIHRQLDTKKLFSPVPSELSDKVEFTFQRRLRPTMSELGEIDPAA
L
E
E
F
K
--
K
G
R
----
V
Y
V
Y
E
---
G
---
N
-----------
Y
-
E
L
---------
T
D
L
V
Y
M
D
E
---
E
P
--
P
-
R
GPDR
E
-
A
L
E
V
A
L
--
Q
---
I
---
A
Y
L
L
N-
A
K
-
P
--------
V
D
E
------
V
Y
-------
Y
-
M
R
-
K
-
I
------
V
---------
I
-
D
-
G
S
-
N
-
V
S
G
---
F
Q
R
T
A
I
IATDGKVETPWGAVGIPTICLEEDAARIIERKDKEVIYRLDRLGIPLIEISTTPDIHHPEQAKVVAKFIGDALRATKKVKRGLGTIRQDLNVSIKGGARIEIKGVQELDMIPIIIEREVERQLNLLKIRDELRKRGVKPKDIKEEFYDVTDIFENTKSKIIARVIKKGGKVLAIKLPKFRGLIGREIQPGRRLGTEFADRAKKYVPGIFHIDELPNYGISQEEVNKVIERLNLSEEDAFVLVAAEEEKAKNALREVIKRAREAIEGVPEETRRALPDGNTEYMRPLPGKARMYPETDIPPLRIPDDLKKKIKENLPELPQAKVERYVKEYKLDRSLAQTLVDDERDELFEELVSMGVKPSLAASILVVVLKG
20
Fugue
44.93
14%
2
- C7 -
-
2VQP
9
MATRX_HRSVA
A:
[1-256]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------E
M
E
T
Y
V
N
K
LHEGS
T
Y
T
A
A
V
Q
Y
N
V
L
E
K
D
D
--
D
P
A
----
S
L
T
I
W
---
V
---
P
-----------
M
-
F
Q
---------
S
S
M
P
A
D
L
L
---
I
K
--
E
-
L
----
A
-
N
V
N
I
L
V
--
K
---
Q
---
I
S
T
P
--
K
G
-
P
--------
S
L
R
------
V
M
-------
I
-
N
S
-
R
-
S
------
A
---------
V
-
L
-
A
Q
-
M
-
P
S
K
---
F
T
I
C
A
N
VSLDDKLAYD
V
T
T
P
C
E
I
K
A
C
S
L
T
C
L
K
S
KNMLTTVKDLTMKTLNPT
H
D
I
I
A
L
C
E
F
E
NIVTS
K
K
V
I
I
P
T
Y
L
R
S
I
S
V
R
NKDLNTLENITT
T
E
F
K
N
A
I
T
N
A
K
I
I
PYSG
L
L
L
V
I
T
VTDNKGAFKYIKPQ
S
Q
F
I
V
D
LGAYLEKES
I
Y
Y
V
T
T
NWKHT
A
T
R
F
A
IKPRE--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
SP3
44.81
16%
85
- C9 -
-
1RL1
-
SGT1_HUMAN
A:
[138-229]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------S
K
I
K
Y
D
W
Y
Q
--
T
E
S
----
Q
V
V
I
T
---
L
---
M
-----------
I
-
K
-----------
N
V
Q
K
N
D
V
N
V
E
F
S
--
E
-
K
----
E
L
S
A
L
V
K
L
--
P
---
S
---
G
E
D
Y
--
N
L
-
K
LELLHPII
P
E
Q
------
S
T
-------
F
-
K
V
-
L
-
S
------
T
K
I
E
I
K
L
K
K
P
E
-
A
-
V
R
-
W
-
E
K
----
L
E
G
Q
G
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
Fugue
43.35
15%
87
- C4 -
4A54
-
EDC3_SCHPO
A:
[-1-94]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GMS
V
A
D
F
Y
--
G
S
N
----
V
E
V
L
L
---
N
---
N
-----------
D
-
S
K
---------
A
R
G
V
I
T
N
F
---
D
S
--
S
-
N
----
S
-
I
L
Q
L
R
L
--
A
---
N
D
S
T
K
S
I
V
--
T
K
-
D
--------
I
K
D
------
L
R
-------
I
-
L
P
-
K
-
N
EIMPKN
G
---------
T
-
K
-
S
P
-
S
-
T
N
S
---
T
K
L
K
S
A
E
T
Y
S
S
KNKWSMD------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
Fugue
41.64
16%
-79
- C6 -
-
1KG1
-
?
A:
[1-60]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
R
C
----
R
Y
T
L
C
---
C
---
D
-----------
G
-
A
L
---------
K
A
V
S
A
C
L
H
---
E
S
--
E
-
S
----
C
-
L
V
P
G
D
C
--
C
---
R
---
G
K
-----
S
-
R
--------
L
T
L
------
C
S
-------
Y
-
G
E
---
G
------
G
---------
N
-
G
-
F
Q
-
C
-
P
T
G
---
Y
R
Q
C
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------