@TOME V3
(Feb 2022)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
3D Alignment Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
3D Alignment Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
PDB Ligands
Affinity Score
Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
Sequence Alignment
Tab of Complexes
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Pm1_007460T0_kcl97: (2019-03-29 )
PGEQDGCLFSVNEKFLEFFNGKSIGGGCVGKGQTKAITLPVNFPITVGADVDCNVFM
Atome Classification :
(20 SA)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------...--------...--...---10------.------------..----.....20--...-------.----....--.30---.---.......40---..-----..-.....50..-....-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PGE--------QD
G
--
C
L
F
---
S
V
------
N
------------
E
K
----
F
L
E
F
FN---GKS-------I----GGGC--VGK---G---Q
T
K
A
I
T
L
P----VN-----F
P
-
I
T
VGADVDC-NVFM-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
Fugue
76.10
26%
10
- C7 -
0.53
4R80
-
?
A:
[1-76]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PS
E
E
E
E
--------
K
R
R
--
A
K
Q
---
V
A
------
K
------------
E
K
----
I
L
E
Q
N
P
---
S
S
K
-------
V
----
Q
V
R
R
--
V
Q
K
Q
--
G
---
N
T
I
R
V
E
L
E
----
I
T
E
NG
K
K
T
N
-
I
T
V
E
V
E
K
Q
G
-
N
T
F
T
V
K
R
I
T
E
T
V
G
S-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
Fugue
61.15
24%
5
- C7 -
0.23
1P65
-
?
A:
[11-67]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DVRHHFT
P
S
E
--------
R
Q
L
--
C
L
S
---
S
I
------
Q
------------
T
A
----
F
N
Q
---------------------
G
A
G
T
--
C
T
L
---
S
---
D
S
G
R
I
S
Y
T
----
V
E
-----
F
S
-
L
P
T
H
H
T
V
R
L
-
I
R
V
T
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
Fugue
56.06
28%
65
- C7 -
0.07
5L2R
14
?
A:
[64-604]
D
F
H
F
S
A
IFQPTDPHHHQ
T
E
F
A
K
VEGSEKY
V
E
E
V
E
V
FG
R
Q
A
L
K
V
NP
E
A
L
T
I
L
A
H
R
A
F
S
D
V
H
H
F
FR
K
D
H
L
E
G
W
R
R
A
I
EDPEAS
D
N
D
R
Y
V
A
T
T
L
L
K
N
A
C
I
A
A
GRVLPSCQDTGTAIVL
G
K
R
G
ELCWTGGE
D
E
K
Y
L
S
K
G
I
W
N
A
Y
R
Y
H
NLRYS
Q
T
A
A
LDMF
K
E
C
N
TGDNLPAQ
L
D
L
L
A
V
P
G
S
D
Y
E
F
L
F
I
AKG
G
G
S
A
N
K
A
Y
L
Y
QETKALLN
P
K
S
L
R
A
F
I
E
E
K
L
K
T
L
GTAACPPYH
I
A
L
V
I
G
GTS
A
E
M
T
M
K
T
V
K
L
A
S
C
RYYDSLPT
T
G
D
--------
K
Y
G
--
R
A
F
R
D
P
E
W
------
E
------------
K
I
----
V
M
E
V
A
Q
---
K
S
G
-------
I
----
G
A
Q
F
--
G
G
K
YFA
H
---
Q
A
R
V
I
R
L
P
----
R
H
-----
G
A
S
C
P
V
G
L
A
V
S
C
-
S
A
D
R
Q
I
L
A
H
I
N
KS
G
I
Y
I
E
Q
L
EQNPAQYLPT
S
V
K
V
D
LKRP
I
D
K
V
R
Q
Q
L
S
Q
Y
PVG
T
R
V
M
L
N
G
T
L
I
V
A
R
D
I
A
H
A
K
I
K
E
M
M
D
N
GEPLP
E
Y
M
K
T
S
P
I
Y
Y
A
G
P
A
K
TPEGYAS
G
S
F
G
P
T
T
AGRMDSY
V
D
L
F
Q
S
H
GGSY
I
T
L
A
K
G
N
RS
K
Q
V
T
D
A
C
K
K
H
G
G
F
Y
L
G
S
IGGP
A
A
I
L
A
K
DSIK
Q
V
T
C
L
A
FPELGME
A
V
W
K
I
E
V
E
D
F
P
A
F
IVVDDKGNDMYSKTLA------------------------------------------------------------------------------------------------------------------------------------------------------------
46
SP3
55.60
22%
18
* C7 *
0.40
1P65
-
?
A:
[11-67]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DVRHHFT
P
S
E
--------
R
Q
L
--
C
L
S
---
S
I
------
Q
------------
T
A
----
F
N
Q
---------------------
G
A
G
T
--
C
T
L
---
S
---
D
S
G
R
I
S
Y
T
----
V
E
-----
F
S
-
L
P
T
H
H
T
V
R
L
I
R
V
T
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
41
SP3
54.23
21%
60
- C9 -
-
1QUB
-
APOH_HUMAN
A:
[1-62]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GRTCPK
P
D
D
--------
L
P
F
--
S
T
V
---
V
P
------
L
------------
K
T
----
F
Y
E
--
P
---
G
E
E
-------
I
T
Y
S
C
K
P
G
Y
--
V
S
R
---
G
---
G
M
R
K
F
I
C
P
----
L
T
GL---
W
P
-
I
N
---
T
L
K
C
-
T
P
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
HHSearch
53.10
25%
-150
- C9 -
-
2MM0
-
?
A:
[9-44]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
N
---
E
A
V
-------
I
----
A
T
G
C
--
V
P
A
---
G
---
G
E
L
R
I
F
V
G
----
S
S
-----
H
S
-
Y
L
I
K
A
T
S
S
C
-
G
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
Fugue
52.81
25%
-12
- C7 -
0.17
5UBE
-
?
A:
[7-122]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RLIKLP
R
T
H
--------
K
D
G
--
H
L
F
---
E
V
------
S
------------
E
A
----
A
I
D
W
I
E
---
Q
Y
Q
-------
H
----
F
-------
K
---
G
---
V
T
K
S
I
V
E
L
----
L
N
-----
L
I
-
S
L
R
G
L
R
S
R
D
-
G
L
V
S
T
T
E
L
I
D
A
T
D
GQLT
R
A
A
I
Q
Q
R
L
R
A
A
V
A
V
GL
F
K
Q
I
P
V
R
FEEG
L
A
G
K
T
M
L
H
R
F
I
N
P
N
Q
L
I
S-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
Fugue
50.40
24%
-110
- C7 -
0.04
2OCC
-
COX1_BOVIN
A:
[1-514]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------MFINRWLFSTN
H
K
D
I
G
T
L
Y
L
L
F
G
A
W
A
G
M
V
G
T
A
L
S
L
L
I
R
A
E
L
GQPGTLLGD
D
Q
I
Y
N
V
V
V
T
A
H
A
F
V
M
I
FFMVMPIMIGGFGNWL
V
P
L
M
I
GAPDMAF
P
R
M
--------
N
N
M
--
S
F
W
---
L
L
------
P
------------
P
S
----
F
L
L
L
L
A
---
S
S
M
-------
V
----
E
---AG
A
G
T
---
G
---
W
T
V
Y
P
P
L
A
----
G
N
-----
L
A
--
H
A
G
A
S
V
D
L
-
T
I
F
S
L
H
L
A
G
V
S
S
I
L
G
A
I
N
F
I
T
T
I
I
NMKPPAMSQYQTP
L
F
V
W
S
V
M
I
T
A
V
L
L
L
L
S
L
P
V
L
A
A
G
I
T
M
L
L
T
D
R
NLNTTFFDPAGGGD
P
I
L
Y
Q
H
L
F
W
F
F
G
H
P
E
V
Y
I
L
I
L
P
G
F
G
M
I
S
H
I
V
T
Y
Y
S
GKKEPFG
Y
M
G
M
V
W
A
M
M
S
I
G
F
L
G
F
I
V
WAHHMFTVGMD
V
D
T
R
A
Y
F
T
S
A
T
M
I
I
A
I
P
T
G
V
K
V
F
S
W
L
A
T
L
HGGNIKWS
P
A
M
M
W
A
L
G
F
I
F
L
F
T
V
G
G
L
T
G
I
V
L
ANSSLDIVLHDTY
Y
V
V
A
H
F
H
Y
V
L
S
MG
A
V
F
A
I
M
G
G
F
V
H
W
F
PLFSGYTLN
D
T
W
A
K
I
H
F
A
I
M
F
V
G
V
N
M
T
FFP
Q
H
F
L
G
L
S
G
M
P
R
RYSDYPDAY
T
M
W
N
T
I
S
S
M
G
S
F
I
S
L
T
A
V
M
L
M
V
F
I
I
W
E
A
F
A
S
KREVLTVDLTTTNLEWLNGCPPPYHTFE
E
P
T
Y
V
N
LK
15
Fugue
49.53
24%
56
- C6 -
-
5A8J
5
?
A:
[2-366]
------------------------------------------------------------AT
V
S
V
S
L
K
S
STNLAFTG
K
P
T
Q
V
S
L
I
V
R
V
S
P
TSFASLSG
I
H
Y
V
V
M
I
D
NSPSMKKEN
K
I
N
L
A
L
S
S
A
S
R
L
V
Q
D
IIPG
N
F
I
S
I
Y
L
F
S
N
D
I
E
T
L
Y
E
G
E
S
G
K
Q
I
E
L
K
S
I
K
M
G
Y
T
TN
L
H
K
A
I
T
K
V
L
E
K
F
KSSE
I
P
V
K
I
I
L
L
S
DGKPTDKRYSRDYES
L
Q
V
P
KN
V
Q
L
I
T
I
G
L
G
EDYN
E
A
I
M
K
I
L
A
D
K
G
S
G
V
F
Y
H
I
NDPSQ
L
P
T
T
L
V
E
Q
K
S
--------
D
K
V
--
A
A
Y
---
N
L
------
T
------------
L
N
----
F
S
E
-----------------------------
G
---
L
---
E
V
I
N
Y
E
M
P
----
V
N
-----
I
P
-
V
V
---
D
K
D
V
-
N
V
Y
A
V
G
N
I
P
P
G
E
T
D
Y
T
L
K
V
T
G
N
Y
V
D
SVSN
K
N
I
E
I
D
E
S
L
V
I
K
R
A
P
D
D
E
V
R
S
N
FD
R
T
V
I
N
E
V
S
Y
Y
M
L
L
R
Y
Y
G
N
L
I
S
E
GK
S
E
E
A
T
R
V
V
Q
E
L
L
T
A
A
E
R
T
KR
V
E
L
I
E
R
T
K
K
LVND
P
K
V
D
L
S
E
V
T
K
T
M
R
T
GSIEG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
Fugue
48.85
22%
74
- C7 -
0.19
1Y9L
1
MXIM_SHIFL
A:
[6-115]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------E
K
E
W
H
I
VPVSKDYFSIPND
L
L
W
S
F
N
TTNK
S
I
N
V
Y
S
KC
I
S
G
K
A
V
Y
S
F
N
AG
K
F
M
G
N
FN
V
K
E
--------
V
D
G
--
C
F
M
---
D
A
------
Q
------------
K
I
----
A
I
D
K
L
F
---
S
M
--------
L
----
K
D
G
V
--
V
L
K
---
G
---
N
------
K
----
I
N
-----
D
T
-
I
L
I
E
K
D
G
E
V
-
K
L
K
L
I
R
G
I-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
38
SP3
48.66
21%
40
- C7 -
0.23
1Q02
-
A:
[1-52]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GS
P
P
E
--------
A
D
P
--------
R
L
------
I
------------
E
S
----
L
S
Q
M
L
S
M
--
G
F
S
-------
D
----
E
G
G
W
--
L
----------
T
R
L
L
Q
-
T
----
K
N
-----
Y
D
-
I
G
A
A
L
D
T
-
I
-
Q
Y
S
K
H----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
Fugue
48.03
22%
-47
- C7 -
0.13
1HA8
-
MER23_EUPRA
A:
[1-51]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
E
--------
C
E
Q
--
C
F
S
---
D
G
------
G
------------
D
C
----
T
T
C
F
N
N
---
G
T
G
-------
P
----
C
A
N
C
--
L
A
G
---
Y
---
P
A
G
C
----------------------
S
N
S
D
C
-
T
A
F
L
S
Q
C
Y
GGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
HHSearch
47.83
35%
-158
- C7 -
0.09
1MID
2
NLTP1_HORVU
A:
[61-90]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
---
N
---
L
N
N
A
A
S
I
P
SKCN
V
N
-----
V
P
-
Y
T
I
S
P
D
I
D
C
-
S
R
I
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
Fugue
47.80
18%
96
- C7 -
0.35
1J7R
-
CAVP_BRALA
A:
[8-84]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LG
P
E
E
--------
K
D
E
--
C
M
K
---
I
F
------
D
I
F
D
RNAENIAP
V
S
D
----
T
M
D
M
L
T
---
K
L
--------------
G
Q
T
--
Y
T
K
---
R
---
E
T
E
A
I
M
K
E
----
A
R
-----
G
P
-
K
G
D
K
K
N
I
G
P
-
E
E
W
L
T
L
C
S
K
W
V
RQ--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
HHSearch
46.64
20%
-13
- C6 -
-
4OU9
-
ACOX_SYNY3
B:
[437-483]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
E
--------
D
D
G
--
W
L
L
---
C
L
I
Y
K
ADL
H
------------
R
S
----
E
L
V
I
L
D
---
A
Q
D
-------
I
----
T
A
----------
P
---
A
I
A
T
L
K
L
K
----
H
H
-----
I
P
-
Y
P
L
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
43
SP3
46.25
22%
-5
- C8 -
-
1WM2
-
SUMO2_HUMAN
A:
[12-89]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TE
N
N
D
H
I
N
L
K
V
A
G
Q
D
G
S
V
V
Q
F
---
K
I
------
K
RHTPL-------
S
K
----
L
M
K
A
Y
C
E
R
Q
G
L
S
MRQ
I
R
F
R
F
----
D
G
Q
P
--
I
N
E
---
T
---
D
T
-----
P
----
A
Q
-----
L
E
-
M
E
D
E
D
T
I
D
---
V
F
Q
Q----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
Fugue
46.20
27%
29
- C6 -
-
5L0Q
1
ADA10_BOVIN
A:
[1-203]
------------------------------------------------------------------------------------------------------------PVGLASGQPICGNGMVEQGEECDCGYSDQCKDECCYDANQPEGKKCKLKPGKQCSPSQGPCCTAHCAFKSKTEKCRDDSDCA
K
E
G
I
C
NGITALC
P
A
S
D
P
K
P
NFTDCNRHT
Q
V
C
I
NGQCAGS
I
C
E
K
H
G
L
E
E
C
T
CASSDGKDDKELCHVCCMK
K
M
E
--------
P
S
T
--
C
A
S
---
T
G
------
S
------------
V
Q
----
W
N
K
Y
F
L
---
G
R
T
-------
I
-------------------------
T
L
Q
----
P
G
-----
S
P
-
C
N
-
D
F
R
G
Y
C
-
D
V
F
M
R
C
R
G
S
A
S
GL--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
Fugue
45.71
17%
32
- C7 -
0.09
1OWT
-
A4_HUMAN
A:
[124-189]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SDA
L
L
V
--------
P
D
K
--
C
K
F
---
L
H
------
Q
------------
E
R
MD
V
C
E
T
H
L
H
W
---
H
T
V
-------
A
----
K
E
T
C
--
S
E
K
---
S
T
N
L
H
D
Y
G
M
L
L
P
----
C
G
-----
I
D
-
K
F
R
G
V
E
F
V
C
-
C
P
L
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
HHSearch
45.52
33%
-50
- C7 -
0.07
2N2Z
-
NLTP_ANEGR
A:
[62-92]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
L
---
N
---
L
N
A
A
A
G
L
P
AKCG
V
N
-----
I
P
-
Y
K
I
S
P
S
T
D
C
-
N
R
V
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
HHSearch
42.07
31%
-76
- C7 -
0.12
2ALG
1
NLTP1_PRUPE
B:
[61-90]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
V
---
N
---
P
N
N
A
A
A
L
P
GKCG
V
S
-----
I
P
-
Y
K
I
S
A
S
T
N
C
-
A
T
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------