@TOME V3
(Feb 2022)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
3D Alignment Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
3D Alignment Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
PDB Ligands
Affinity Score
Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
Sequence Alignment
Tab of Complexes
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : CCD43_HUMAN: (2020-01-31 )
MAAPSEVAAIAPGEGDGGGGGFGSWLDGRLEALGVDRAVYGAYILGILQEEEEEEKLDALQGILSAFLEEDSLLNICKEIVERWSETQNVVTKVKKEDEVQAIATLIEKQAQIVVKPRMVSEEEKQRKAALLAQYADVTDEEDEADEKDDSGATTMNIGSDKLLFRNTNVEDVLNARKLERDSLRDESQRKKEQDKLQRERDKLAKQERKEKEKKRTQRGERKR
Atome Classification :
(20 SA)
---------------------------------------.........10..---..----....20-------------....--....30..--.--..------....-40-.---------.----..-----.....50.----..--------------------.....60...-----------....-------.--70..------------....---..80.---------.....--------...90......---..100..--.....110.....-------.------.120-.---.......130.......140--.....-----....150--.....-.---.--..160----...--------....170....-----...180---------....--.....-----190.......200.......210.......220..
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
---------------------------------------MAAPS
E
V
A
A
IAPG---EG----DGGGGG-------------
F
G
S
W
--
L
D
G
R
L
-
E
A
--L--GV------
D
R
A
V
-
Y
--
G
---------
A
----
Y
I
-----
L
G
I
LQE
E
E
----
E
E
--------------------
E
K
L
D
A
L
Q
G
I
L
-----------
S
A
F
L-------E--E
D
S
L
------------
L
N
I
C
---
K
E
I
-
V
---------
E
R
W
S
E
--------
T
Q
N
V
V
T
K
VKKE---
D
E
V
Q
A
I
A
--
T
L
I
E
KQ
A
Q
I
V
VKP-------R------MV
S
--
E
---
E
E
K
Q
R
K
A
A
L
L
A
Q
Y
ADVTD----EEDEA-----DEKDD----SG
A
T
T
-
M
---N--IGS
D
K
----
L
L
F
--------RNT
N
V
E
D
V
L
N
A
-----
R
KL
E
-----------
R
D
SL--R
D
E
S
Q
-----
R
K
K
E
Q
D
K
L
Q
R
E
R
D
K
L
A
K
Q
E
R
K
E
K
E
K
K
R
TQRGERKR
25
Fugue
64.15
21%
74
- C2 -
-
2XQH
-
?
A:
[23-280]
--------------------------------------S
D
A
K
A
S
G
E
F
S
V
A
V
G
---
N
G
ARAT
E
K
A
S
T
A
-------------
V
G
S
W
AA
A
D
G
K
Q
S
T
A
--
L
--
G
V
------
G
T
Y
A
-
Y
--
A
NASTALGSV
A
----
F
V
DNTAT
Y
G
T
A
A
G
N
R
----
A
K
--------------------
V
D
K
D
A
T
E
G
T
A
LGAKATVTNKN
S
V
A
L
-------
G
--
A
N
S
V
------------
T
T
R
D
---
N
E
V
-
Y
---------
I
G
Y
K
T
GTES----
D
K
T
Y
G
T
R
V
L
G
G
---
L
S
D
G
T
R
N
--
S
D
A
A
T
V
G
Q
L
N
R
K
V
-------
G
------
G
V
Y
--
D
---
D
V
K
A
R
I
T
V
E
S
E
K
Q
K
K
Y
T
D
----
Q
K
T
S
E
-----
V
N
E
K
V
----
E
A
R
T
T
-
V
---
G
--
V
D
S
D
G
----
K
L
T
--------
R
A
E
G
A
T
K
T
I
A
---------
V
-----------
N
D
G
L
--
V
A
L
S
G
-----
R
T
D
R
I
D
Y
A
V
G
A
I
D
G
R
V
T
R
N
T
Q
S
I
E
K
N
S
K
A
I
A
A
N
T
R
28
Fugue
63.52
18%
84
- C2 -
-
19HC
11
CYC9_DESDA
A:
[1-292]
AALEPTDSGAPSAIVMFPVGEKPNPKGAAMKPVVFNHLI
H
E
K
K
I
A
D
C
E
T
C
H
H
---
T
G
----
D
P
V
S
C
S
-------------
T
C
H
T
--
V
E
G
K
A
-
E
G
DY
I
--
T
L
------
D
R
A
M
-
H
--
A
---------
T
----
D
I
-----
A
A
R
A
K
G
N
T
----
P
T
--------------------
S
C
V
S
C
H
Q
S
E
T
-----------
K
E
R
R
-------
E
--
C
A
G
C
------------
H
A
I
T
---
T
P
K
D
D
---------
E
A
W
C
A
--------
T
C
H
D
I
T
P
S
M
T
P
---
S
E
M
Q
K
G
I
AG
T
L
L
P
G
D
N
E
A
L
A
A
E
-------
T
------
V
L
A
--
E
---
A
T
V
A
P
V
S
P
M
L
A
P
Y
K
V
V
I
D
----
A
L
A
D
K
-----
Y
E
P
S
D
FTHR
R
H
L
T
S
-
L
---
M
ES
I
K
D
D
K
----
L
A
Q
--------
A
F
H
D
K
P
E
I
L
C
A
TCHHR
S
P
L
S
-----------
L
T
P
P
--
K
C
G
S
C
-----
H
T
K
E
I
D
A
A
D
P
G
R
P
N
L
M
A
A
Y
H
L
E
C
M
G
C
H
K
G
M
A
V
A
R
P
21
Fugue
58.90
19%
108
- C2 -
-
4IIK
3
SIDD_LEGPH
A:
[1-314]
-----------------------------------------
M
R
S
I
I
T
Q
I
C
N
G
---
V
L
----
H
G
Q
S
Y
Q
SGSNDLDKGNSEI
F
A
S
S
--
L
F
V
H
L
-
N
E
--
Q
--
G
K
EIKDSD
D
K
I
V
-
I
--
G
YTKDGMAF-
Q
----
I
V
-----
V
D
G
F
Y
G
C
E
----
R
Q
--------------------
A
V
F
S
F
I
D
N
Y
V
-----------
L
P
L
I
-------
D
--
N
F
S
L
DLTRYPDSKKVT
E
S
L
I
---
H
T
I
-
Y
---------
S
L
R
S
K
HAPLAEF-
T
M
S
L
C
V
T
Y
Q
K
D
---
E
Q
L
F
C
A
G
--
F
G
I
G
D
-
T
G
I
A
I
K
R
-------
N
EGTIEQ
L
V
C
--
H
---
T
E
V
D
G
F
K
D
A
F
D
N
Y
--
S
S
A
----
N
I
D
L
V
-----
I
E
R
N
S
----
V
F
N
T
K
-
V
---
M
--
P
G
-
D
E
----
L
V
G
YTYVPPML
E
M
T
E
K
E
F
E
V
E
K
-----
R
I
V
R
-----------
H
L
N
L
--
D
P
G
N
F
-----
D
D
K
--
D
P
L
F
S
Q
L
L
Q
V
V
K
S
K
Q
K
Q
L
V
E
Q
A
K
E
T
G
Q
I
Q
R
31
Fugue
58.73
15%
54
- C2 -
-
4XLG
-
SLX1_CANGA
A:
[3-300]
--------------EFQQIPDFYGCYLLQSISKRQSFYI
G
S
T
P
N
P
V
R
R
L
R
Q
H
---
N
G
----
S
L
S
R
T
K
-------------
R
D
G
T
--
R
P
W
E
M
-
V
A
--
I
VY
G
F
------
P
S
R
I
-
A
--
A
---------
L
----
Q
F
-----
Q
H
A
W
Q
H
G
T
RYIS
I
H
--------------------
H
K
L
A
M
I
T
S
L
L
K----------
N
E
Y
F
-------
R
YM
D
L
T
L
------------
H
F
F
N
---
Q
K
V
-
E
---------
E
I
W
K
N
DKFNVSNY
T
V
S
L
S
Q
D
A
L
T
E
INN
D
T
I
D
D
I
M
--
D
V
N
E
K
N
M
E
L
V
Q
N
L
-------
Y
------
S
T
T
--
L
---
A
E
K
T
K
T
L
L
L
Y
K
E
K
I
D
T
G
I
----
N
T
C
Q
F
-----
C
N
K
I
-------
I
K
H
-
N
---
N
--
I
S
E
N
L
----
F
A
F
C-------
R
D
T
S
C
T
F
V
S
H
L
-----
A
C
A
Y
-----------
R
Y
F
M
--
S
E
D
T
I
-----
I
P
Q
-
S
P
K
C
P
K
C
Y
T
L
L
K
W
C
D
V
I
Y
Y
S
I
K
L
N
K
------
32
Fugue
56.96
15%
80
- C2 -
-
1KC6
-
T2C2_HAEIF
A:
[1-257]
------------------------------------SFI
K
P
I
Y
Q
D
I
N
S
I
L
I
G
QKV
K
R
----
P
A
A
G
E
P
-------------
F
E
K
L
--
V
Y
K
F
L
-
K
E
--
N
--
L
S
------
D
L
T
F
K
Q
--
Y
---------
E
----
Y
L
-----
N
D
L
F
M
K
N
P
----
A
I
--------------------
I
G
H
E
A
R
Y
K
L
F
-----------
N
-------------
S
P
T
L
------------
L
F
L
L
SRG
K
A
A
-
T
---------
E
N
W
S
I
--------
E
N
--
L
F
E
E
K
Q
N
---
D
T
A
D
I
L
L
--
V
K
D
Q
F
Y
E
L
L
D
V
K
T
-------
R
------
N
I
S
--
K
---
S
A
Q
A
P
N
I
I
S
A
Y
K
L
A
Q
T
C
A
----
K
M
I
D
N
-----
K
E
F
D
L
----
F
D
I
N
Y
-
L
---
E
--
V
D
W
E
L
NGED
L
V
C
--------
V
S
T
S
F
A
E
L
F
K
S
-----
E
P
S
E
LYINWAAAMQI
Q
F
H
V
--
R
D
L
D
Q
GFNGT
R
E
E
W
A
K
S
Y
L
K
H
F
V
T
Q
A
E
Q
R
A
I
S
M
I
D
K
F
V
K
P
F
K
K
Y
I
24
Fugue
55.91
13%
62
- C2 -
-
3IHR
2
UCHL5_HUMAN
A:
[7-311]
----------------------------------EWCLM
E
S
D
P
G
V
F
T
E
L
I
K
G
---
F
G
-----
C
R
G
A
Q
-------------
V
E
E
I
--
W
S
L
E
P
-
E
N
--
F
--
E
K
------
L
K
P
V
-
H
--
G
---------
L
----
I
F
-----
L
F
K
W
Q
P
G
E
----
E
P
AGSVVQDSRLDTIFFAKQVI
N
N
A
C
A
T
Q
A
I
V
-----------
S
V
L
L
NCTHQDV
H
--
L
G
E
T
------------
L
S
E
F
---
K
E
F
-
S
QSFDAAMKG
L
A
L
S
N
--------
S
D
V
I
R
Q
V
H
N
S
F
---
A
A
F
H
F
V
S
--
Y
V
P
V
N
G
R
L
Y
E
L
D
G
-------
L
------
R
E
G
PI
D
---
L
G
A
C
N
Q
D
D
W
I
S
A
V
R
P
V
I
E
----
K
R
I
Q
K
-----
Y
S
E
G
E
----
I
R
F
N
L
M
A
---
I
--
V
S
D
R
K
----
M
----------
I
Y
E
Q
K
I
A
E
L
Q
R
-----
Q
L
A
E
-----------
E
P
D
L
--
S
A
I
Q
S
-----
E
V
A
K
N
Q
L
I
E
E
E
V
Q
K
L
K
R
Y
K
I
E
N
I
R
R
K
H
N
Y
L
P
F
I
E
L
20
PsiBlast_PDB
53.20
23%
39
- C2 -
-
3ZJC
2
GIMA7_HUMAN
A:
[106-236]
--------------------------------------------------------------------------------
L
G
R
Y
--
T
E
E
E
Q
-
K
T
--
V
--
A
L
------
I
K
A
V
-
F
--
G
---------
K
SAMK
H
M
-----
V
I
L
F
T
R
K
E
----
E
L
--------------------
E
G
Q
S
F
H
D
F
I
A
-----------
D
A
D
V
-------
G
--
L
K
S
I
------------
V
K
E
C
---
G
N
R
-
C
---------
C
A
F
S
N
--------
S
--
T
-
S
K
A
E
K
E
---
S
Q
V
Q
E
L
V
--
E
L
I
E
K
M
V
Q
C
N
E
G
A
YFSDDIY
K
------
D
T
E
--
E
---
R
L
K
Q
R
E
E
V
L
R
K
I
Y
T
D
Q
L
N
----
E
E
------------------------------------------------------------------------------------------------------------------------------------
37
HHSearch
51.56
22%
-92
- C2 -
-
6FF7
-
?
Y:
[45-114]
----------------------------------------------------------------
L
E
V
-------------
I
K
P
W
--
I
T
K
R
V
T
E
I
--
L
--
G
F
------
E
D
D
V
-
V
--
I
---------
E
----
F
I
-----
F
N
Q
L
E
V
K
N
----
P
D
--------------------
S
K
--
M
M
Q
I
N
L
-----------
T
G
F
L
-------
N
--
G
K
N
A
------------
R
E
F
M
---
G
E
L
-------------
W
P
L
--------
L
L
S
A
Q
E
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
49.91
30%
-55
- C2 -
-
2J0X
1
AK3_ECOLI
A:
[55-142]
--------------------------------------------------------------------------------------------------------------------------------------------
L
E
P
G
E
----
R
F
--------------------
E
K
L
D
A
I
R
N
I
Q
-----------
F
A
I
L
-------
E
--
R
L
R
Y
------------
P
N
V
I
---
R
E
E
-
I
---------
E
R
L
L
E
--------
N
I
T
V
L
A
---------
E
A
A
A
L
A
--
T
S
P
A
L
T
D
E
L
V
S
H
G
-------
E
------
L
M
S
--
T
LLF
V
E
I
L
R
E
R
D
V
Q
A
Q
W
F
D
V
--------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
48.62
30%
-58
- C2 -
-
2J0W
1
AK3_ECOLI
A:
[55-142]
--------------------------------------------------------------------------------------------------------------------------------------------
L
E
P
G
E
----
R
F
--------------------
E
K
L
D
A
I
R
N
I
Q
-----------
F
A
I
L
-------
E
--
R
L
R
Y
------------
P
N
V
I
---
R
E
E
-
I
---------
E
R
L
L
E
--------
N
I
T
V
L
A
---------
E
A
A
A
L
A
--
T
S
P
A
L
T
D
E
L
V
S
H
G
-------
E
------
L
M
S
--
T
LLF
V
E
I
L
R
E
R
D
V
Q
A
Q
W
F
D
V
--------------------------------------------------------------------------------------------------------------------------------------------
53
HHSearch
46.92
18%
-273
- C2 -
-
3VU7
-
H:
[41-91]
---------------------------------------------------------------
V
K
T
L
-------------
L
R
E
W
--
I
T
T
I
S
-
D
P
--
M
--
E
E
------
D
I
L
Q
-
V
--
V
---------
K
----
Y
C
-----
T
D
L
I
-
E
E
K
----
D
L
--------------------
E
K
L
D
L
V
I
K
Y
M
-----------
K
R
L
M
-------
Q
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
52
HHSearch
46.78
17%
-191
- C2 -
-
2LSJ
-
A:
[36-87]
---------------------------------------------------------------
V
K
T
L
-------------
L
K
E
W
--
I
T
T
I
S
-
D
P
--
M
--
E
E
------
D
I
L
Q
-
V
--
V
---------
R
----
Y
C
-----
T
D
L
I
-
E
E
K
----
D
L
--------------------
E
K
L
D
L
V
I
K
Y
M
-----------
K
R
L
M
-------
Q
--
Q
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
46.61
23%
145
- C2 -
-
5A5T
-
?
A:
[18-602]
-------------------------------------------------------------------------------------------------------------------------------------------
I
L
Q
E
K
E
----
E
Q
--------------------
H
Q
L
A
V
T
A
Y
L
K
-----------
N
S
R
K
-------
E
--
H
Q
R
I
------------
L
A
R
R
---
Q
T
I
-
E
---------
E
R
K
E
R
--------
L
E
S
L
N
I
Q
R
E
K
E
---
E
L
E
Q
R
E
A
--
E
L
C
Q
Q
K
V
R
K
A
E
E
E
-------
R
------
L
R
Q
--
E
---
A
K
E
R
E
K
E
R
I
L
Q
E
H
E
Q
I
K
K
KTVR
E
R
L
E
Q
-----
I
K
K
T
E
----
L
G
A
K
A
-
A
-----------------
F
--------
K
D
I
D
I
E
D
L
--------
E
E
L
D
-----------
P
D
F
I
MA
K
Q
V
E
Q
-----
L
E
K
E
K
K
E
L
Q
---
E
R
L
K
N
Q
E
K
K
I
D
Y
F
E
R
A
K
R
L
E
---
55
HHSearch
46.06
18%
-233
- C2 -
-
4FJO
1
A:
[14-64]
---------------------------------------------------------------
V
K
T
L
-------------
L
K
E
W
--
I
T
T
I
S
-
D
P
--
M
--
E
E
------
D
I
L
Q
-
V
--
V
---------
R
----
Y
C
-----
T
D
L
I
-
E
E
K
----
D
L
--------------------
E
K
L
D
L
V
I
K
Y
M
-----------
K
R
L
M
-------
Q
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
51
HHSearch
46.04
18%
-237
- C2 -
-
4EXT
-
A:
[14-63]
----------------------------------------------------------------
K
T
L
-------------
L
R
E
W
--
I
T
T
I
S
-
D
P
--
M
--
E
E
------
D
I
L
Q
-
V
--
V
---------
K
----
Y
C
-----
T
D
L
I
-
E
E
K
----
D
L
--------------------
E
K
L
D
L
V
I
K
Y
M
-----------
K
R
L
M
-------
Q
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
48
HHSearch
44.93
18%
-220
* C2 *
-
4BA9
-
POLK_HUMAN (first)
A:
[41-90]
----------------------------------------------------------------
K
T
L
-------------
L
R
E
W
--
I
T
T
I
S
-
D
P
--
M
--
E
E
------
D
I
L
Q
-
V
--
V
---------
K
----
Y
C
-----
T
D
L
I
-
E
E
K
----
D
L
--------------------
E
K
L
D
L
V
I
K
Y
M
-----------
K
R
L
M
-------
Q
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
49
HHSearch
44.92
18%
-217
- C2 -
-
4BA9
-
POLK_HUMAN (first)
C:
[41-90]
----------------------------------------------------------------
K
T
L
-------------
L
R
E
W
--
I
T
T
I
S
-
D
P
--
M
--
E
E
------
D
I
L
Q
-
V
--
V
---------
K
----
Y
C
-----
T
D
L
I
-
E
E
K
----
D
L
--------------------
E
K
L
D
L
V
I
K
Y
M
-----------
K
R
L
M
-------
Q
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
38
HHSearch
44.44
20%
-71
- C2 -
-
1MP1
-
SRRM1_HUMAN
A:
[45-105]
----------------------------------------------------------------
L
E
V
-------------
I
K
P
W
--
I
T
K
R
V
-
T
E
I-
L
--
G
F
------
E
D
D
V
-
V
--
I
---------
E
----
F
I
-----
F
N
Q
L
E
V
K
N
----
P
D
--------------------
S
--
K
M
M
Q
I
N
L
-----------
T
G
F
L
-------
N
--
G
K
N
A
------------
R
E
F
M
---
G
E
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
45
HHSearch
44.28
30%
-27
- C2 -
-
1K5O
-
PP14A_PIG
A:
[17-83]
------------------------------------------------------------------
D
-------------
V
E
K
W
--
I
D
G
R
L
-
E
E
--
L
Y-
R
G
------
R
E
A
D
-
M
PD
E
---------
V
----
N
I
-----
D
E
L
L
E
L
E
S
----
E
E
--------------------
E
R
S
R
K
I
Q
G
L
L
-----------
K
S
C
T
-------
N
----
P
T
------------
E
N
F
V
---
Q
E
L
-
L
---------
V
K
L
R
G
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
PsiBlast_PDB
44.28
28%
119
- C2 -
-
2QP9
-
VPS4_YEAST
X:
[270-345]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
K
I
Q
S
A
T
H
F
K
D
V
S
---------
T
RKLTP
S
S
P
G
D
----
D
G
A
I
E
-
M
SWT
D
--
I
E
A
D
E
----
L
K
E
--------
P
D
L
T
I
K
D
F
L
K
A
-----
I
K
S
T
-----------
R
P
T
V
--
N
E
D
D
L
-----
L
K
Q
E
Q
------------------------------