@TOME V3
(Feb 2022)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
3D Alignment Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
3D Alignment Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
PDB Ligands
Affinity Score
Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
Sequence Alignment
Tab of Complexes
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : RBMX_HUMAN: (2020-02-03 )
MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPRGLRGGRGGSGGTRGPPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPPPKRSAPSGPVRSSSGMGGRAPVSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPPRDYTYRDYGHSSSRDDYPSRGYSDRDGYGRDRDYSDHPSGGSYRDSYESYGNSRSAPPTRGPPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSGRDRVGRQERGLPPSMERGYPPPRDSYSSSSRGAPRGGGRGGSRSDRGGGRSRY
Atome Classification :
(20 SA)
------------------.........10........20........30........40........50........60........---70........80..----......90-........100.......110.......120.......130.......140.......150.......160.......170.......180.......190.......200.......210.......220.......230.......240.......250.......260.......270.......280.......290.......300.......310.......320.......330.......340.......350.......360.......370.......380.......390
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
------------------MVEADRPG
K
L
F
I
GGLNTE
T
N
E
K
A
L
E
A
V
F
GK
Y
G
R
I
V
E
V
L
LMKDRETNKSR
G
F
A
F
V
T
FESPAD
A
K
D
A
A
RDM---NGKSLDG
K
A
I
K
V
E
Q----ATKPSFES-GRRGPPPPPRSRGPPRGLRGGRGGSGGTRGPPSRGGHMDDG
G
Y
S
M
N
F
NMSSSRGPLPVKRGPPPRSGGPPPKRSAPSGPVRSSSGMGGRAPVSRGRDSYGGPPRREPLPSRR
D
V
Y
LSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPPRDY
T
Y
RDYGHSSSRDDYPSRGYSDRDGYGRDRDYSDHPSGGSY
R
D
S
Y
E
SYGNSRSAPPTRGPPPSYGGSSRYDDYSSSRDGYGGSRDSYSS
S
R
S
D
L
Y
SS
G
R
D
RVGRQERGLPP
S
M
ERGYPPPRDSYSSSSRGAPRGGGRGGSRSDRGGGRSRY
1
PsiBlast_PDB
85.06
100%
-92
- C2 -
-
2MB0
-
RBMX_HUMAN
B:
[1-95]
------------------
M
V
E
A
D
R
P
G
K
L
F
I
G
G
L
N
T
E
T
N
E
K
A
L
E
A
V
F
G
K
Y
G
R
I
V
E
V
L
L
M
K
D
R
E
T
N
K
S
R
G
F
A
F
V
T
F
E
S
P
A
D
A
K
D
A
A
R
D
M
---
N
G
K
S
L
D
G
K
A
I
K
V
E
Q
----
A
T
K
P
S
F
E
S
-
G
R
R
G
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
83.69
77%
-72
- C2 -
-
2FY1
-
RBY1A_HUMAN
A:
[1-105]
------------------
M
V
E
A
D
H
P
G
K
L
F
I
G
G
L
N
R
E
T
N
E
K
M
L
K
A
V
F
G
K
H
G
P
I
S
E
V
L
L
I
K
D
R
-
T
S
K
S
R
G
F
A
F
I
T
F
E
N
P
A
D
A
K
N
A
A
K
D
M
---
N
G
K
S
L
H
G
K
A
I
K
V
E
Q
----
A
K
K
P
S
F
Q
S
G
G
R
R
R
P
P
A
S
S
R
N
R
S
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
81.20
100%
-103
- C2 -
-
2MKS
-
RBMX_HUMAN
A:
[3-92]
------------------
M
V
E
A
D
R
P
G
K
L
F
I
G
G
L
N
T
E
T
N
E
K
A
L
E
A
V
F
G
K
Y
G
R
I
V
E
V
L
L
M
K
D
R
E
T
N
K
S
R
G
F
A
F
V
T
F
E
S
P
A
D
A
K
D
A
A
R
D
M
---
N
G
K
S
L
D
G
K
A
I
K
V
E
Q
----
A
T
K
P
S
F
E
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
65.16
63%
-111
- C2 -
-
5TBX
-
CIRBP_HUMAN
A:
[6-86]
------------------------
E
G
K
L
F
V
G
G
L
S
F
D
T
N
E
Q
S
L
E
Q
V
F
S
K
Y
G
Q
I
S
E
V
V
V
V
K
D
R
E
T
Q
R
S
R
G
F
G
F
V
T
F
E
N
I
D
D
A
K
D
A
M
M
A
M
---
N
G
K
S
V
D
G
R
Q
I
R
V
D
Q
----
A
G
K
S
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
PsiBlast_PDB
64.48
44%
-196
- C2 -
-
3LPY
2
PPIE_HUMAN
A:
[5-79]
---------------------------
L
Y
V
G
G
L
A
E
E
V
D
D
K
V
L
H
A
A
F
I
P
F
G
D
I
T
D
I
Q
I
P
L
D
Y
E
T
E
K
H
R
G
F
A
F
V
E
F
E
L
A
E
D
A
A
A
A
I
D
N
M
---
N
E
S
E
L
F
G
R
T
I
R
V
N
L
----
A
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
PsiBlast_PDB
62.70
44%
-193
- C2 -
-
3MDF
-
PPIE_HUMAN
A:
[8-82]
---------------------------
L
Y
V
G
G
L
A
E
E
V
D
D
K
V
L
H
A
A
F
I
P
F
G
D
I
T
D
I
Q
I
P
L
D
Y
E
T
E
K
H
R
G
F
A
F
V
E
F
E
L
A
E
D
A
A
A
A
I
D
N
M
---
N
E
S
E
L
F
G
R
T
I
R
V
N
L
----
A
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
47
HHSearch
60.91
33%
-135
- C2 -
-
2RNE
-
TIA1_MOUSE
A:
[94-178]
----------------------
S
N
H
F
H
V
F
V
G
D
L
S
P
E
I
T
T
E
D
I
K
A
A
F
A
P
F
G
R
I
S
D
A
R
V
V
K
D
M
A
T
G
K
S
K
G
Y
G
F
V
S
F
F
N
K
W
D
A
E
N
A
I
Q
Q
M
---
G
G
Q
W
L
G
G
R
Q
I
R
T
N
W
----
A
T
R
K
P
P
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
60.62
62%
-85
- C2 -
-
1X5S
-
CIRBP_HUMAN
A:
[9-93]
---------------------
A
S
D
E
G
K
L
F
V
G
G
L
S
F
D
T
N
E
Q
S
L
E
Q
V
F
S
K
Y
G
Q
I
S
E
V
V
V
V
K
D
R
E
T
Q
R
S
R
G
F
G
F
V
T
F
E
N
I
D
D
A
K
D
A
M
M
A
M
---
N
G
K
S
V
D
G
R
Q
I
R
V
D
Q
----
A
G
K
S
S
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
34
HHSearch
60.29
27%
-147
- C2 -
-
5M8I
-
A:
[25-109]
---------------------
G
P
E
G
A
N
L
F
I
Y
H
L
P
Q
E
F
G
D
Q
D
I
L
Q
M
F
M
P
F
G
N
V
I
S
A
K
V
F
I
D
K
Q
T
N
L
S
K
C
F
G
F
V
S
Y
D
N
P
V
S
A
Q
A
A
I
Q
A
M
---
N
G
F
Q
I
G
M
K
R
L
K
V
Q
L
----
K
R
S
K
N
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
PsiBlast_PDB
60.11
44%
-184
- C2 -
-
2KYX
-
PPIE_HUMAN
A:
[8-82]
---------------------------
L
Y
V
G
G
L
A
E
E
V
D
D
K
V
L
H
A
A
F
I
P
F
G
D
I
T
D
I
Q
I
P
L
D
Y
E
T
E
K
H
R
G
F
A
F
V
E
F
E
L
A
E
D
A
A
A
A
I
D
N
M
---
N
E
S
E
L
F
G
R
T
I
R
V
N
L
----
A
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
45
HHSearch
59.57
29%
-153
- C2 -
-
6ELD
-
RU1C_HUMAN (first)
A:
[4-113]
--------------------
E
D
E
M
P
K
T
L
Y
V
G
N
L
S
R
D
V
T
E
A
L
I
L
Q
L
F
S
Q
I
G
P
C
K
N
C
K
M
I
------
G
N
D
P
Y
C
F
V
E
F
H
E
H
R
H
A
A
A
A
L
A
A
M
---
N
G
R
K
I
M
G
K
E
V
K
V
N
W
----
A
T
T
P
S
S
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
49
Fugue
58.46
21%
-78
- C2 -
-
3S8S
-
SET1A_HUMAN
A:
[2-108]
--------------------
G
Q
I
P
L
K
E
V
T
F
A
R
L
N
D
N
V
R
E
T
F
L
K
D
M
C
R
K
Y
G
E
V
E
E
V
E
I
L
L
H
P
R
T
R
K
H
L
G
L
A
R
V
L
F
T
S
T
R
G
A
K
E
T
V
K
N
L
---
H
L
T
S
V
M
G
N
I
I
H
A
Q
L
DIKG
Q
Q
R
M
K
Y
Y
E
-
L
I
V
N
G
S
Y
T
P
Q
T
V
P
T
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
55
Fugue
58.22
21%
-101
- C2 -
-
1WI6
-
RAVR1_MOUSE
A:
[62-149]
--------------------
G
S
S
G
S
S
G
I
L
I
R
G
L
P
G
D
V
T
N
Q
E
V
H
D
L
L
S
D
Y
E
-------
L
K
Y
C
F
V
D
K
Y
K
G
T
A
F
V
T
L
L
N
G
E
Q
A
E
A
A
I
N
T
F
---
H
Q
S
R
L
R
E
R
E
L
S
V
Q
L
----
Q
------------
P
T
D
A
L
L
C
S
G
P
S
S
G
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
52
Fugue
57.90
18%
82
- C2 -
-
1WEL
-
RBM12_HUMAN
A:
[405-528]
GSSGSSGKSPSGQKRSRS
R
S
P
H
E
A
G
F
C
V
Y
L
K
G
L
P
F
E
A
E
N
K
H
V
I
D
F
F
K
K
L
D
I
V
E
D
S
I
Y
I
A
Y
G
P
N
G
K
A
T
G
E
G
F
V
E
F
R
N
E
A
D
Y
K
A
A
L
-
C
R
---
H
K
Q
Y
M
G
N
R
F
I
Q
V
H
P
----
I
T
K
K
G
M
L
E
-
K
I
D
M
I
R
K
R
L
Q
S
G
P
S
S
G
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
56.89
42%
-127
- C2 -
-
4C7Q
-
?
A:
[7-82]
--------------------------
R
C
F
V
G
G
L
A
W
A
T
T
D
Q
T
L
G
E
A
F
S
Q
F
G
E
I
L
D
S
K
I
I
N
D
R
E
T
G
R
S
R
G
F
G
F
V
T
F
K
D
E
K
A
M
R
D
A
I
E
G
M
---
N
G
Q
D
L
D
G
R
N
I
T
V
N
E
----
A
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
HHSearch
56.80
29%
-52
- C2 -
-
5ZWN
-
RU17_YEAST
Q:
[103-188]
---------------------
T
D
P
Y
R
T
I
F
I
G
R
L
P
Y
D
L
D
E
I
E
L
Q
K
Y
F
V
K
F
G
E
I
E
K
I
R
I
V
K
D
K
I
T
Q
K
S
K
G
Y
A
F
I
V
F
K
D
P
I
S
S
K
M
A
F
K
E
I
GVH
R
G
I
Q
I
K
D
R
I
C
I
V
D
I
----
E
R
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
HHSearch
56.50
27%
-104
- C2 -
-
4PKD
-
RU17_HUMAN
B:
[165-249]
-----------------------
A
F
K
T
L
F
V
A
R
V
N
Y
D
T
T
E
S
K
L
R
R
E
F
E
V
Y
G
P
I
K
R
I
H
M
V
Y
S
K
R
S
G
K
P
R
G
Y
A
F
I
E
Y
E
H
E
R
D
M
H
S
A
Y
K
H
A
---
D
G
K
K
I
D
G
R
R
V
L
V
D
V
----
E
R
G
R
T
V
K
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
56.50
42%
-125
- C2 -
-
2DH8
-
DAZP1_HUMAN
A:
[6-80]
---------------------
A
D
E
I
G
K
L
F
V
G
G
L
D
W
S
T
T
Q
E
T
L
R
S
Y
F
S
Q
Y
G
E
V
V
D
C
V
I
M
K
D
K
T
T
N
Q
S
R
G
F
G
F
V
K
F
K
D
P
-
N
C
V
G
T
V
L
A
S
---
R
P
H
T
L
D
G
R
N
I
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
56.07
47%
-147
- C2 -
-
2CQC
-
TRA2B_HUMAN
A:
[120-191]
---------------------------
L
G
V
F
G
L
S
L
Y
T
T
E
R
D
L
R
E
V
F
S
K
Y
G
P
I
A
D
V
S
I
V
Y
D
Q
Q
S
R
R
S
R
G
F
A
F
V
Y
F
E
N
V
D
D
A
K
E
A
K
E
R
A
---
N
G
M
E
L
D
G
R
R
I
R
V
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
55.97
43%
-110
- C2 -
-
2MPU
-
?
A:
[10-85]
--------------------------
R
C
F
V
G
S
L
S
W
N
T
D
D
R
G
L
E
A
A
F
S
S
F
G
E
I
L
D
A
K
I
I
N
D
R
E
T
G
R
S
R
G
F
G
F
V
S
F
S
N
E
Q
A
M
Q
D
A
I
E
G
M
---
N
G
K
E
L
D
G
R
S
I
V
V
N
E
----
A
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------