@TOME V3
(Feb 2022)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
3D Alignment Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
3D Alignment Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
PDB Ligands
Affinity Score
Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
Sequence Alignment
Tab of Complexes
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : RD23A_HUMAN: (2020-02-03 )
MAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKTKAGQGTSAPPEASPTAAPESSTSFPPAPTSGMSHPPPAAREDKSPSEESAPTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLTGIPGSPEPEHGSVQESQVSEQPATEAAGENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGEVGAIGEEAPQMNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLSQNFDDE
Atome Classification :
(20 SA)
.........10........20........30........40........50........60........70........80........90........100.......110.......120.......130.......140.......150.......160.......170.......180.......190.......200.......210.......220.......230.......240.......250.......260.......270.......280.......290.......300.......310.......320.......330.......340.......350.......360.
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
M
A
V
T
I
T
L
K
TLQQQ
T
F
K
I
R
ME
P
D
E
T
V
K
V
L
K
E
K
I
E
AEKGRDAFPVAG
Q
K
L
I
Y
AGKILSDDVPIR
D
Y
R
IDEK
N
F
V
V
V
M
V
T
KTKAGQGTSAPPEASPTAAPESSTSFPPAPTSGMSHPPPAAREDKSPSEESAPTTSPESVSGSVPSSGSSGREEDAAS
T
L
VTG
S
E
Y
E
T
M
L
T
E
I
M
SMGY
E
R
E
R
V
V
A
A
L
R
A
SYN
N
P
H
R
A
V
E
Y
L
L
TGIPGSPEPEHGSV
Q
E
S
Q
VSEQPATEAAGE
N
P
L
E
F
L
RDQ
P
Q
F
Q
N
M
R
Q
V
I
Q
QNP
A
L
L
P
A
L
L
Q
Q
L
GQE
N
P
Q
L
L
Q
Q
I
S
R
H
Q
E
Q
F
I
Q
M
L
NEPPGELADISDVEGEVGAIGEEAPQM
N
Y
I
Q
VTP
Q
E
K
E
A
I
E
R
L
K
ALGF
P
E
S
L
V
I
Q
A
Y
F
ACEKNENLA
A
N
F
L
LSQNFDDE
42
Fugue
85.95
99%
-99
* C1 *
-
1OQY
-
RD23A_HUMAN
A:
[1-363]
S
A
V
T
I
T
L
K
T
L
Q
Q
Q
T
F
K
I
R
M
E
P
D
E
T
V
K
V
L
K
E
K
I
E
A
E
K
G
R
D
A
F
P
V
A
G
Q
K
L
I
Y
A
G
K
I
L
S
D
D
V
P
I
R
D
Y
R
I
D
E
K
N
F
V
V
V
M
V
T
K
T
K
A
G
Q
G
T
S
A
P
P
E
A
S
P
T
A
A
P
E
S
S
T
S
F
P
P
A
P
T
S
G
M
S
H
P
P
P
A
A
R
E
D
K
S
P
S
E
E
S
A
P
T
T
S
P
E
S
V
S
G
S
V
P
S
S
G
S
S
G
R
E
E
D
A
A
S
T
L
V
T
G
S
E
Y
E
T
M
L
T
E
I
M
S
M
G
Y
E
R
E
R
V
V
A
A
L
R
A
S
Y
N
N
P
H
R
A
V
E
Y
L
L
T
G
I
P
G
S
P
E
P
E
H
G
S
V
Q
E
S
Q
V
S
E
Q
P
A
T
E
A
A
G
E
N
P
L
E
F
L
R
D
Q
P
Q
F
Q
N
M
R
Q
V
I
Q
Q
N
P
A
L
L
P
A
L
L
Q
Q
L
G
Q
E
N
P
Q
L
L
Q
Q
I
S
R
H
Q
E
Q
F
I
Q
M
L
N
E
P
P
G
E
L
A
D
I
S
D
V
E
G
E
V
G
A
I
G
E
E
A
P
Q
M
N
Y
I
Q
V
T
P
Q
E
K
E
A
I
E
R
L
K
A
L
G
F
P
E
S
L
V
I
Q
A
Y
F
A
C
E
K
N
E
N
L
A
A
N
F
L
L
S
Q
N
F
D
D
E
1
PsiBlast_PDB
84.86
100%
-100
- C1 -
-
1OQY
-
RD23A_HUMAN
A:
[2-363]
-
A
V
T
I
T
L
K
T
L
Q
Q
Q
T
F
K
I
R
M
E
P
D
E
T
V
K
V
L
K
E
K
I
E
A
E
K
G
R
D
A
F
P
V
A
G
Q
K
L
I
Y
A
G
K
I
L
S
D
D
V
P
I
R
D
Y
R
I
D
E
K
N
F
V
V
V
M
V
T
K
T
K
A
G
Q
G
T
S
A
P
P
E
A
S
P
T
A
A
P
E
S
S
T
S
F
P
P
A
P
T
S
G
M
S
H
P
P
P
A
A
R
E
D
K
S
P
S
E
E
S
A
P
T
T
S
P
E
S
V
S
G
S
V
P
S
S
G
S
S
G
R
E
E
D
A
A
S
T
L
V
T
G
S
E
Y
E
T
M
L
T
E
I
M
S
M
G
Y
E
R
E
R
V
V
A
A
L
R
A
S
Y
N
N
P
H
R
A
V
E
Y
L
L
T
G
I
P
G
S
P
E
P
E
H
G
S
V
Q
E
S
Q
V
S
E
Q
P
A
T
E
A
A
G
E
N
P
L
E
F
L
R
D
Q
P
Q
F
Q
N
M
R
Q
V
I
Q
Q
N
P
A
L
L
P
A
L
L
Q
Q
L
G
Q
E
N
P
Q
L
L
Q
Q
I
S
R
H
Q
E
Q
F
I
Q
M
L
N
E
P
P
G
E
L
A
D
I
S
D
V
E
G
E
V
G
A
I
G
E
E
A
P
Q
M
N
Y
I
Q
V
T
P
Q
E
K
E
A
I
E
R
L
K
A
L
G
F
P
E
S
L
V
I
Q
A
Y
F
A
C
E
K
N
E
N
L
A
A
N
F
L
L
S
Q
N
F
D
D
E
2
PsiBlast_PDB
61.78
100%
-147
- C1 -
-
1QZE
-
RD23A_HUMAN
A:
[2-360]
-
A
V
T
I
T
L
K
T
L
Q
Q
Q
T
F
K
I
R
M
E
P
D
E
T
V
K
V
L
K
E
K
I
E
A
E
K
G
R
D
A
F
P
V
A
G
Q
K
L
I
Y
A
G
K
I
L
S
D
D
V
P
I
R
D
Y
R
I
D
E
K
N
F
V
V
V
M
V
----------------------------------------------------------------------------------
T
G
S
E
Y
E
T
M
L
T
E
I
M
S
M
G
Y
E
R
E
R
V
V
A
A
L
R
A
S
Y
N
N
P
H
R
A
V
E
Y
L
L
T
-------------------------------
L
E
F
L
R
D
Q
P
Q
F
Q
N
M
R
Q
V
I
Q
Q
N
P
A
L
L
P
A
L
L
Q
Q
L
G
Q
E
N
P
Q
L
L
Q
Q
I
S
R
H
Q
E
Q
F
I
Q
M
---------------------------------
T
P
Q
E
K
E
A
I
E
R
L
K
A
L
G
F
P
E
S
L
V
I
Q
A
Y
F
A
C
E
K
N
E
N
L
A
A
N
F
L
L
S
Q
N
F
---
21
HHSearch
38.64
36%
-153
- C1 -
-
2QSF
-
RAD23_YEAST
X:
[255-395]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
G
L
T
V
E
D
L
L
S
L
R
Q
V
V
S
G
N
P
E
A
L
A
P
L
L
E
N
I
S
A
R
Y
P
Q
L
R
E
H
I
M
A
N
P
E
V
F
V
S
M
L
L
E
A
V
---------------------
G
S
F
Q
V
D
Y
T
P
E
D
D
Q
A
I
S
R
L
C
E
L
G
F
E
R
D
L
V
I
Q
V
Y
F
A
C
D
K
N
E
E
A
A
A
N
I
L
F
S
D
-----
16
PsiBlast_PDB
37.51
38%
-155
- C1 -
-
2QSF
-
RAD23_YEAST
X:
[264-395]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
L
R
Q
V
V
S
G
N
P
E
A
L
A
P
L
L
E
N
I
S
A
R
Y
P
Q
L
R
E
H
I
M
A
N
P
E
V
F
V
S
M
L
L
E
A
V
------------------
G
S
F
Q
V
D
Y
---
T
P
E
D
D
Q
A
I
S
R
L
C
E
L
G
F
E
R
D
L
V
I
Q
V
Y
F
A
C
D
K
N
E
E
A
A
A
N
I
L
F
S
D
-----
4
PsiBlast_PDB
35.90
100%
-174
- C1 -
-
2WYQ
-
RD23A_HUMAN
A:
[4-80]
M
A
V
T
I
T
L
K
T
L
Q
Q
Q
T
F
K
I
R
M
E
P
D
E
T
V
K
V
L
K
E
K
I
E
A
E
K
G
R
D
A
F
P
V
A
G
Q
K
L
I
Y
A
G
K
I
L
S
D
D
V
P
I
R
D
Y
R
I
D
E
K
N
F
V
V
V
M
V
T
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
33.73
100%
-126
- C1 -
-
1P98
-
RD23A_HUMAN
A:
[1-78]
M
A
V
T
I
T
L
K
T
L
Q
Q
Q
T
F
K
I
R
M
E
P
D
E
T
V
K
V
L
K
E
K
I
E
A
E
K
G
R
D
A
F
P
V
A
G
Q
K
L
I
Y
A
G
K
I
L
S
D
D
V
P
I
R
D
Y
R
I
D
E
K
N
F
V
V
V
M
V
T
K
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
33.44
79%
-148
- C1 -
-
1UEL
-
RD23B_HUMAN
A:
[3-79]
----
V
T
L
K
T
L
Q
Q
Q
T
F
K
I
D
I
D
P
E
E
T
V
K
A
L
K
E
K
I
E
S
E
K
G
K
D
A
F
P
V
A
G
Q
K
L
I
Y
A
G
K
I
L
N
D
D
T
A
L
K
E
Y
K
I
D
E
K
N
F
V
V
V
M
V
T
K
P
K
A
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
33.18
79%
-140
- C1 -
-
1P1A
-
RD23B_HUMAN
A:
[6-82]
----
V
T
L
K
T
L
Q
Q
Q
T
F
K
I
D
I
D
P
E
E
T
V
K
A
L
K
E
K
I
E
S
E
K
G
K
D
A
F
P
V
A
G
Q
K
L
I
Y
A
G
K
I
L
N
D
D
T
A
L
K
E
Y
K
I
D
E
K
N
F
V
V
V
M
V
T
K
P
K
A
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
32.09
100%
-112
- C1 -
-
1P9D
-
RD23A_HUMAN
U:
[1-78]
M
A
V
T
I
T
L
K
T
L
Q
Q
Q
T
F
K
I
R
M
E
P
D
E
T
V
K
V
L
K
E
K
I
E
A
E
K
G
R
D
A
F
P
V
A
G
Q
K
L
I
Y
A
G
K
I
L
S
D
D
V
P
I
R
D
Y
R
I
D
E
K
N
F
V
V
V
M
V
T
K
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
HHSearch
32.04
86%
-264
- C1 -
-
2F4M
-
B:
[3-59]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
L
E
F
L
R
N
Q
P
Q
F
Q
Q
M
R
Q
I
I
Q
Q
N
P
S
L
L
P
A
L
L
Q
Q
I
G
R
E
N
P
Q
L
L
Q
Q
I
S
Q
H
Q
E
H
F
I
Q
M
L
N
E
P
----------------------------------------------------------------------------
13
PsiBlast_PDB
31.05
83%
-228
- C1 -
-
1PVE
-
A:
[5-64]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
L
E
F
L
R
N
Q
P
Q
F
Q
Q
M
R
Q
I
I
Q
Q
N
P
S
L
L
P
A
L
L
Q
Q
I
G
R
E
N
P
Q
L
L
Q
Q
I
S
Q
H
Q
E
H
F
I
Q
M
L
N
E
P
V
Q
E
-------------------------------------------------------------------------
22
HHSearch
30.91
80%
-223
- C1 -
-
1PVE
-
A:
[3-63]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
M
P
L
E
F
L
R
N
Q
P
Q
F
Q
Q
M
R
Q
I
I
Q
Q
N
P
S
L
L
P
A
L
L
Q
Q
I
G
R
E
N
P
Q
L
L
Q
Q
I
S
Q
H
Q
E
H
F
I
Q
M
L
N
E
P
V
Q
--------------------------------------------------------------------------
11
PsiBlast_PDB
30.22
83%
-225
- C1 -
-
2F4M
-
B:
[2-61]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
P
L
E
F
L
R
N
Q
P
Q
F
Q
Q
M
R
Q
I
I
Q
Q
N
P
S
L
L
P
A
L
L
Q
Q
I
G
R
E
N
P
Q
L
L
Q
Q
I
S
Q
H
Q
E
H
F
I
Q
M
L
N
E
P
V
G
--------------------------------------------------------------------------
45
Fugue
30.06
100%
-178
- C1 -
-
1IFY
-
RD23A_HUMAN
A:
[156-204]
-----------------------------------------------------------------------------------------------------------------------------------------------------------
T
L
V
T
G
S
E
Y
E
T
M
L
T
E
I
M
S
M
G
Y
E
R
E
R
V
V
A
A
L
R
A
S
Y
N
N
P
H
R
A
V
E
Y
L
L
T
G
I
P
G
---------------------------------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
30.06
100%
-178
- C1 -
-
1IFY
-
RD23A_HUMAN
A:
[156-204]
-----------------------------------------------------------------------------------------------------------------------------------------------------------
T
L
V
T
G
S
E
Y
E
T
M
L
T
E
I
M
S
M
G
Y
E
R
E
R
V
V
A
A
L
R
A
S
Y
N
N
P
H
R
A
V
E
Y
L
L
T
G
I
P
G
---------------------------------------------------------------------------------------------------------------------------------------------------------------
12
PsiBlast_PDB
29.83
83%
-220
- C1 -
-
2F4O
-
B:
[2-61]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
P
L
E
F
L
R
N
Q
P
Q
F
Q
Q
M
R
Q
I
I
Q
Q
N
P
S
L
L
P
A
L
L
Q
Q
I
G
R
E
N
P
Q
L
L
Q
Q
I
S
Q
H
Q
E
H
F
I
Q
M
L
N
E
P
V
G
--------------------------------------------------------------------------
10
PsiBlast_PDB
29.51
100%
-177
- C1 -
-
5XBO
-
B:
[1-49]
-----------------------------------------------------------------------------------------------------------------------------------------------------------
T
L
V
T
G
S
E
Y
E
T
M
L
T
E
I
M
S
M
G
Y
E
R
E
R
V
V
A
A
L
R
A
S
Y
N
N
P
H
R
A
V
E
Y
L
L
T
G
I
P
G
---------------------------------------------------------------------------------------------------------------------------------------------------------------
15
PsiBlast_PDB
29.02
97%
-176
- C1 -
-
1F4I
-
A:
[1-45]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
E
K
E
A
I
E
R
L
K
A
L
G
F
E
E
S
L
V
I
Q
A
Y
F
A
C
E
K
N
E
N
L
A
A
N
F
L
L
S
Q
N
F
D
D
E
25
HHSearch
28.77
14%
-132
- C1 -
-
4AE4
1
B:
[7-116]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------
S
E
R
Q
C
V
E
T
V
V
N
M
G
Y
S
Y
E
C
V
L
R
A
M
K
A
A
G
A
N
I
E
Q
I
L
D
Y
L
F
A
H
G
Q
L
C
E
K
G
F
D
P
----------------------------------
L
L
V
-------
E
E
A
L
E
L
-----------
H
Q
C
S
-------------------------------------
E
E
K
M
M
E
F
L
Q
L
M
S
K
F
K
E
M
G
F
E
L
K
D
I
K
E
V
L
L
L
H
N
N
D
Q
D
N
A
L
E
D
L
M
A
R
A
G
---